Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   LPO_RS11320 Genome accession   NC_018139
Coordinates   2535279..2536634 (-) Length   451 a.a.
NCBI ID   WP_027220504.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. pneumophila     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2530279..2541634
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPO_RS11305 (LPO_2400) pilU 2531288..2532409 (-) 1122 WP_014842283.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  LPO_RS11310 (LPO_2401) - 2532499..2534427 (-) 1929 WP_014842284.1 FAD/FMN-containing dehydrogenase -
  LPO_RS11315 (LPO_2402) - 2534452..2535282 (-) 831 WP_027220503.1 phytanoyl-CoA dioxygenase family protein -
  LPO_RS11320 (LPO_2403) radA/sms 2535279..2536634 (-) 1356 WP_027220504.1 DNA repair protein RadA Machinery gene
  LPO_RS11325 (LPO_2404) - 2536866..2537744 (+) 879 WP_014842287.1 lpg2327 family Dot/Icm T4SS effector -
  LPO_RS11330 (LPO_2405) lem22 2538009..2538392 (+) 384 WP_014842288.1 Dot/Icm T4SS effector Lem22 -
  LPO_RS11335 (LPO_2406) - 2538586..2538816 (+) 231 WP_011947173.1 exodeoxyribonuclease VII small subunit -
  LPO_RS11340 (LPO_2407) - 2538797..2539693 (+) 897 WP_027220505.1 polyprenyl synthetase family protein -
  LPO_RS11345 (LPO_2408) bioC 2539737..2540591 (-) 855 WP_014842290.1 malonyl-ACP O-methyltransferase BioC -
  LPO_RS11350 (LPO_2409) comFC 2540635..2541339 (+) 705 WP_370695942.1 ComF family protein Machinery gene

Sequence

Protein


Download         Length: 451 a.a.        Molecular weight: 49015.71 Da        Isoelectric Point: 7.7495

>NTDB_id=43645 LPO_RS11320 WP_027220504.1 2535279..2536634(-) (radA/sms) [Legionella pneumophila subsp. pneumophila]
MMKVKTQFVCNQCAAIFKQWAGQCTQCGAWNSIVEEGIVPENKTLRSGQWANQRSVITAVEDVVMDKIVRMDCGISELNR
VLGGGLVYGSVVLIGGDPGIGKSTLLLQTLANLSMQETVLYVTGEESLQQVAMRAQRLGLPLAGLRLLAETQVESIIAQA
QKEKPRIIVVDSVQTIFTEAISSAPGGVSQVRESAAQLVRYAKMTNTAIFLVGHVTKEGTLAGPRVLEHMVDSVLYFEGQ
NDSRFRVIRAIKNRFGAVNELGVFAMTDKGLKEVANPSAIFLSRQPEPTPGSAVMVTWEGSRPMLVEVQALVDEAHGQQA
KRVTAGLEHNRLAILLAVLHRHGGIATYDQDVFINVVGGVKVTETASDLALLAAVISSLRNRIFDSETIIFGEVGLAGEI
RPVQSGQERIKEAIKHGFKRAIVPFANAPKQQLDSMTVEPVKHLRDVLEKM

Nucleotide


Download         Length: 1356 bp        

>NTDB_id=43645 LPO_RS11320 WP_027220504.1 2535279..2536634(-) (radA/sms) [Legionella pneumophila subsp. pneumophila]
ATTATGAAAGTGAAAACCCAGTTTGTTTGTAATCAATGCGCGGCTATTTTTAAACAATGGGCAGGACAATGCACTCAATG
TGGCGCCTGGAATTCCATTGTTGAAGAAGGGATTGTGCCTGAAAACAAGACTTTACGAAGTGGGCAATGGGCTAATCAGC
GCTCTGTCATCACTGCTGTTGAAGACGTCGTCATGGACAAAATAGTACGTATGGATTGTGGTATATCTGAGCTCAACCGG
GTTTTGGGAGGGGGGCTGGTTTATGGCTCGGTTGTTTTGATTGGAGGGGATCCGGGGATCGGTAAATCCACCTTACTGTT
GCAAACGCTGGCTAATTTATCTATGCAAGAAACAGTATTGTATGTGACGGGGGAAGAGTCATTACAACAAGTTGCCATGC
GTGCCCAAAGATTGGGACTACCTTTGGCCGGATTGCGGCTATTGGCAGAAACTCAGGTTGAATCCATCATTGCTCAAGCC
CAAAAGGAAAAACCGCGAATTATTGTCGTCGATTCAGTACAAACGATATTCACTGAAGCCATAAGTTCTGCTCCGGGAGG
AGTTAGTCAAGTCAGGGAATCAGCAGCACAATTGGTGCGTTATGCCAAGATGACCAATACGGCCATCTTCCTGGTAGGGC
ATGTCACCAAGGAAGGAACATTAGCCGGGCCTCGGGTGTTAGAACATATGGTTGATAGTGTTCTCTATTTTGAGGGGCAA
AATGATAGCCGCTTCAGAGTCATTCGCGCCATTAAAAATCGTTTTGGCGCTGTCAATGAATTAGGTGTATTTGCGATGAC
TGACAAAGGCCTGAAGGAGGTAGCCAACCCCTCAGCTATTTTTTTATCTCGCCAGCCCGAACCTACGCCTGGCAGTGCAG
TGATGGTGACTTGGGAAGGATCAAGACCCATGTTGGTAGAAGTACAAGCATTGGTTGATGAGGCCCACGGTCAGCAAGCG
AAACGCGTTACTGCGGGTCTTGAGCATAATCGCCTGGCCATTTTGTTAGCTGTTTTACACCGTCATGGAGGTATCGCTAC
TTACGATCAGGATGTTTTTATCAATGTAGTCGGGGGAGTGAAAGTGACTGAAACAGCGAGTGATTTGGCTTTGTTGGCTG
CAGTGATTTCAAGTTTACGTAATCGTATATTTGATAGTGAAACCATCATATTCGGTGAAGTGGGATTAGCTGGGGAAATC
AGACCAGTGCAAAGTGGTCAAGAACGCATTAAGGAGGCTATAAAACATGGATTCAAGCGTGCTATAGTCCCTTTTGCCAA
CGCTCCCAAACAGCAACTCGATTCCATGACGGTAGAGCCAGTTAAACATTTGCGAGATGTATTGGAGAAAATGTGA

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(329-427)

AAA domain (AAA_25)

(74-219)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

48.268

96.009

0.463
  radA Streptococcus mitis SK321

48.349

94.013

0.455
  radA Streptococcus pneumoniae Rx1

48.349

94.013

0.455
  radA Streptococcus pneumoniae D39

48.349

94.013

0.455
  radA Streptococcus pneumoniae R6

48.349

94.013

0.455
  radA Streptococcus pneumoniae TIGR4

48.349

94.013

0.455
  radA Streptococcus mitis NCTC 12261

48.113

94.013

0.452