Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   HF500_RS09810 Genome accession   NZ_CP051162
Coordinates   1938342..1939289 (+) Length   315 a.a.
NCBI ID   WP_063166160.1    Uniprot ID   -
Organism   Geobacillus subterraneus strain CPW16     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1933342..1944289
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HF500_RS09790 (HF500_09790) - 1933357..1935186 (+) 1830 WP_168368428.1 assimilatory sulfite reductase (NADPH) flavoprotein subunit -
  HF500_RS09795 (HF500_09795) cysI 1935213..1936934 (+) 1722 WP_168368429.1 assimilatory sulfite reductase (NADPH) hemoprotein subunit -
  HF500_RS09800 (HF500_09800) - 1937035..1937590 (+) 556 Protein_1887 aldehyde dehydrogenase family protein -
  HF500_RS09805 (HF500_09805) - 1937656..1937907 (+) 252 WP_244956350.1 hypothetical protein -
  HF500_RS09810 (HF500_09810) ceuB 1938342..1939289 (+) 948 WP_063166160.1 ABC transporter permease Machinery gene
  HF500_RS09815 (HF500_09815) - 1939282..1940232 (+) 951 WP_063166159.1 iron chelate uptake ABC transporter family permease subunit -
  HF500_RS09820 (HF500_09820) - 1940226..1940981 (+) 756 WP_063166158.1 ABC transporter ATP-binding protein -
  HF500_RS09825 (HF500_09825) - 1941367..1942332 (+) 966 WP_063166157.1 siderophore ABC transporter substrate-binding protein -
  HF500_RS09830 (HF500_09830) - 1942365..1943093 (-) 729 WP_168368430.1 hypothetical protein -

Sequence

Protein


Download         Length: 315 a.a.        Molecular weight: 34829.84 Da        Isoelectric Point: 9.4611

>NTDB_id=436414 HF500_RS09810 WP_063166160.1 1938342..1939289(+) (ceuB) [Geobacillus subterraneus strain CPW16]
MKKWVLLLFGLSLLSLFVGVHDLSPRELWERDRDAWEIFLISRLPRLVSIIIAGASVSICGLIMQQLSQNKFVSPTTAGT
MDWARLGLLVSMILFASAAPIVKAAVAVLFAFVGTLLFMTVLDRVKYKDSVFIPLVGLMFGNIVGSVTTFLAYKYDLIQS
LSAWLQGDFSVMMQGRYEMLYISVPLMVVAYAYANRFTIAGMGEEMATNLGLRYRSIVYTGLIIVAIISSIEVLTVGSLP
FLGLIIPNIVSMYYGDHLRKVLPVTALAGALFVLVCDLLGRIVIYPYEIPIGLTVGVIGSGIFLYLLIRRTKQYV

Nucleotide


Download         Length: 948 bp        

>NTDB_id=436414 HF500_RS09810 WP_063166160.1 1938342..1939289(+) (ceuB) [Geobacillus subterraneus strain CPW16]
ATGAAAAAATGGGTGTTGTTGCTTTTTGGATTATCGCTTCTTTCCTTATTTGTCGGGGTACATGATTTATCGCCCCGTGA
GCTGTGGGAGAGGGATCGTGATGCGTGGGAAATTTTCTTGATCAGCCGGCTGCCGCGGCTCGTCAGCATCATCATCGCTG
GGGCGAGCGTCAGCATTTGCGGCTTAATTATGCAACAGCTTAGCCAAAACAAGTTCGTGTCGCCGACGACGGCAGGAACG
ATGGACTGGGCTCGGCTTGGGCTATTAGTGTCCATGATTTTGTTCGCTTCGGCTGCGCCCATCGTCAAGGCCGCTGTTGC
TGTTTTGTTTGCATTTGTTGGAACACTGTTGTTCATGACGGTGTTAGATCGTGTCAAATATAAAGATTCGGTGTTTATTC
CGCTTGTCGGTCTCATGTTTGGGAATATCGTCGGCTCGGTGACAACGTTTTTGGCGTATAAATATGATTTGATCCAATCG
CTGTCCGCTTGGCTACAAGGCGATTTTTCGGTTATGATGCAAGGACGCTATGAGATGTTATACATTAGCGTCCCGCTTAT
GGTGGTCGCTTACGCGTATGCCAATCGGTTTACCATCGCAGGCATGGGAGAAGAGATGGCCACGAATTTAGGGCTTCGTT
ACCGATCGATTGTGTATACAGGACTGATCATTGTTGCGATCATTTCATCGATTGAAGTGTTGACGGTCGGCTCTCTGCCG
TTTTTAGGGTTGATCATTCCGAATATTGTGTCAATGTATTATGGCGATCATTTACGCAAAGTATTACCGGTAACTGCGCT
TGCTGGGGCGTTGTTCGTACTTGTTTGCGATTTGCTCGGTCGGATTGTCATTTATCCATATGAGATTCCGATCGGCTTAA
CAGTAGGGGTGATCGGGAGCGGCATCTTTTTATATTTGCTTATAAGGAGAACGAAGCAATATGTCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(8-309)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

50.637

99.683

0.505