Detailed information NTG0436404

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: INP99_RS07600
• Genome accession: NZ_CP063111
• Coordinates: 1561802..1563223 (-)
• Length: 473 a.a.
• NCBI ID: WP_049365493.1
• Uniprot ID: -
• Organism: Haemophilus parainfluenzae strain M1C152_1
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1556802..1568223

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
INP99_RS07570 (INP99_07560)	-	1556879..1558327 (+)	1449	WP_197542041.1	hypothetical protein	-
INP99_RS07575 (INP99_07565)	-	1558421..1558750 (-)	330	WP_197542042.1	TusE/DsrC/DsvC family sulfur relay protein	-
INP99_RS07580 (INP99_07570)	ttcA	1558752..1559681 (-)	930	WP_070714006.1	tRNA 2-thiocytidine(32) synthetase TtcA	-
INP99_RS07590 (INP99_07580)	ftnA	1560027..1560527 (-)	501	WP_126471352.1	non-heme ferritin	-
INP99_RS07595 (INP99_07585)	ftnA	1560548..1561033 (-)	486	WP_014065387.1	non-heme ferritin	-
INP99_RS07600 (INP99_07590)	sbcB	1561802..1563223 (-)	1422	WP_049365493.1	exodeoxyribonuclease I	Machinery gene
INP99_RS07605 (INP99_07595)	-	1563226..1564098 (-)	873	WP_197542043.1	DMT family transporter	-

Sequence

Protein

• Length: 473 a.a.
• Molecular weight: 54606.05 Da
• Isoelectric Point: 5.2954

>NTDB_id=436404 INP99_RS07600 WP_049365493.1 1561802..1563223(-) (sbcB) [Haemophilus parainfluenzae strain M1C152_1]
MANDFSFFIYDYESFGINPASDRPAQFAGIRTDADFNIIGEPIMLYCKQTNDYLPAPEAVMVTGITPQECNEKGIPEPEF
AAKILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWKNGNSRWDLLDLVRVCYALRPEGINWAYDDDGMPSF
RLEKLTKANGIEHENAHDAMADVYATIAMAKLIKEKQPKLFQFFFEHRGKREIEKLIDTAEMTPLVHVSGMLGNYRGNCA
WVAPLAWHPTNQNAVIVCDLSGDIDHLLSKSAVDLRQDLYTKKSELEERGVSSVPLKLVHINKCPILAPAKTLLPENAAR
LGIDRQQCLGNLAKLRQSLDIREKVIEIFSEEREFEPSDNVETELYNGFFSNADKNNMAILRDLPPEKLAEHGLVFEDKR
IPELLFHYRARHFYKTLNRAEQIKWQKYRQRKLEQSSVKFEESLQQLAEKYSDNPTKLNLLQQVYEYGAKLLS

Nucleotide

• Length: 1422 bp

>NTDB_id=436404 INP99_RS07600 WP_049365493.1 1561802..1563223(-) (sbcB) [Haemophilus parainfluenzae strain M1C152_1]
ATGGCAAACGATTTTAGTTTTTTTATCTACGATTACGAAAGTTTTGGTATCAATCCGGCAAGTGATCGTCCGGCTCAATT
TGCTGGTATTCGTACCGATGCAGATTTCAATATTATTGGTGAGCCTATTATGTTGTATTGTAAGCAAACCAATGATTATT
TACCCGCTCCGGAAGCCGTAATGGTCACAGGAATCACGCCACAAGAATGTAATGAAAAGGGGATTCCTGAGCCTGAATTT
GCCGCAAAAATTCTAGCTGAGTTTTCACAACCTAATACTTGTGTGATGGGTTACAACAACATTCGTTATGACGATGAAAT
GACGCGTTATACCTTTTACCGTAATTTCATTGATCCCTACGAGTATAGCTGGAAAAATGGCAATTCTCGATGGGATTTAC
TGGATTTGGTCAGAGTCTGCTATGCTTTGCGTCCAGAGGGAATTAATTGGGCTTATGACGATGATGGTATGCCAAGCTTT
CGCTTAGAAAAACTAACCAAAGCAAATGGTATTGAGCATGAAAACGCCCATGATGCGATGGCGGATGTGTATGCAACCAT
CGCTATGGCTAAATTAATCAAAGAAAAGCAGCCTAAGTTATTTCAATTCTTTTTTGAGCATAGAGGTAAGAGGGAAATTG
AGAAGCTAATTGATACCGCAGAAATGACACCATTAGTGCACGTTTCAGGTATGCTAGGGAATTATCGCGGCAATTGTGCT
TGGGTGGCACCATTAGCATGGCATCCAACTAATCAAAATGCTGTAATCGTCTGTGATTTATCAGGTGATATTGATCATTT
ACTCAGTAAAAGTGCGGTTGATTTGCGACAAGATTTATATACCAAGAAAAGCGAGCTAGAAGAAAGGGGAGTTTCATCAG
TTCCATTGAAATTGGTTCATATTAATAAATGCCCAATTTTGGCTCCTGCAAAAACGTTACTGCCAGAAAATGCAGCTCGT
TTAGGGATAGACAGACAACAATGCTTAGGTAATTTAGCAAAATTGCGCCAATCCTTAGATATTCGCGAGAAAGTTATTGA
AATATTCTCAGAAGAGCGCGAATTTGAGCCGAGTGATAATGTAGAAACAGAGCTTTATAACGGTTTCTTTAGCAACGCCG
ATAAAAACAACATGGCTATTTTACGCGATTTACCACCTGAAAAATTAGCTGAGCATGGTTTAGTGTTTGAAGATAAACGA
ATTCCTGAATTGTTATTCCATTATCGTGCAAGACATTTCTACAAAACCCTAAATCGTGCTGAGCAAATCAAATGGCAAAA
ATATCGCCAACGTAAATTAGAACAAAGTTCGGTTAAATTTGAAGAAAGTTTACAGCAGTTAGCAGAGAAATATTCGGATA
ATCCAACCAAACTGAATTTACTGCAACAGGTTTATGAATATGGAGCAAAACTGTTATCTTAA

Domains

Predicted by InterProScan.

• Exonuclease C-terminal (ExoI_SH3) (208-469)

• Exonuclease (RNase_T) (9-188)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	56.009	98.52	0.552