Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB   Type   Machinery gene
Locus tag   INP99_RS03705 Genome accession   NZ_CP063111
Coordinates   759606..760118 (+) Length   170 a.a.
NCBI ID   WP_197542723.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M1C152_1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 754606..765118
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP99_RS03685 (INP99_03680) psiE 754695..755111 (+) 417 WP_197542720.1 phosphate-starvation-inducible protein PsiE -
  INP99_RS03690 (INP99_03685) - 755147..755992 (-) 846 WP_197542721.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  INP99_RS03695 (INP99_03690) - 756059..758671 (-) 2613 WP_054420354.1 penicillin-binding protein 1A -
  INP99_RS03700 (INP99_03695) comA 758771..759613 (+) 843 WP_197542722.1 competence protein ComA Machinery gene
  INP99_RS03705 (INP99_03700) comB 759606..760118 (+) 513 WP_197542723.1 competence protein ComB Machinery gene
  INP99_RS03710 (INP99_03705) comC 760115..760657 (+) 543 WP_197542724.1 competence protein ComC Machinery gene
  INP99_RS03715 (INP99_03710) - 760657..761040 (+) 384 WP_070582959.1 pilus assembly protein PilP -
  INP99_RS03720 (INP99_03715) comE 761042..762424 (+) 1383 WP_197542725.1 type IV pilus secretin PilQ Machinery gene
  INP99_RS03725 (INP99_03720) - 762444..763133 (+) 690 WP_197542726.1 ComF family protein -
  INP99_RS03730 (INP99_03725) nfuA 763249..763833 (+) 585 WP_014064659.1 Fe-S biogenesis protein NfuA -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 20263.33 Da        Isoelectric Point: 6.7576

>NTDB_id=436378 INP99_RS03705 WP_197542723.1 759606..760118(+) (comB) [Haemophilus parainfluenzae strain M1C152_1]
MFSLNLLPWRLEQHQKAFRRFMWQGFIWLACSVLIVIGLNQLNEQQGQALSQTKEKLTQITHQVHQKRIQVQQLQSSLKE
MNELTEMDTKYVYRLLNLLSELPLKQGELDEFTLNAKQIVLSGMTESQQEFEEIHQFLKRHFTEVNLTKFQPVQQQLFFQ
FDIHLSESVQ

Nucleotide


Download         Length: 513 bp        

>NTDB_id=436378 INP99_RS03705 WP_197542723.1 759606..760118(+) (comB) [Haemophilus parainfluenzae strain M1C152_1]
ATGTTTAGCCTTAATTTATTGCCTTGGCGCTTAGAACAACATCAAAAGGCCTTTCGTCGTTTTATGTGGCAAGGTTTCAT
TTGGCTAGCTTGTTCAGTTTTGATTGTCATTGGATTGAACCAACTCAATGAACAACAAGGGCAAGCCCTAAGTCAGACAA
AAGAAAAACTGACACAAATAACTCATCAAGTCCATCAGAAACGCATTCAGGTTCAGCAACTACAAAGTAGTCTGAAAGAA
ATGAATGAGCTGACAGAAATGGATACGAAATATGTGTATCGCTTGCTTAATTTATTAAGTGAGCTGCCATTAAAACAGGG
CGAGTTAGATGAATTTACGCTCAATGCTAAGCAAATTGTCCTTTCAGGAATGACAGAAAGCCAACAAGAGTTTGAGGAGA
TACATCAATTTCTCAAACGCCATTTTACAGAGGTTAACTTAACTAAGTTTCAGCCAGTGCAACAGCAGTTATTTTTTCAA
TTTGATATTCATTTATCGGAGTCTGTGCAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB Haemophilus influenzae 86-028NP

40.994

94.706

0.388
  comB Haemophilus influenzae Rd KW20

40.373

94.706

0.382