Detailed information NTG0436343

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: INQ00_RS07685
• Genome accession: NZ_CP063110
• Coordinates: 1575977..1577398 (-)
• Length: 473 a.a.
• NCBI ID: WP_197546702.1
• Uniprot ID: -
• Organism: Haemophilus parainfluenzae strain M1C160_1
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1570977..1582398

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
INQ00_RS07655 (INQ00_07660)	-	1571061..1572509 (+)	1449	WP_197546699.1	hypothetical protein	-
INQ00_RS07660 (INQ00_07665)	-	1572603..1572932 (-)	330	WP_014065383.1	TusE/DsrC/DsvC family sulfur relay protein	-
INQ00_RS07665 (INQ00_07670)	ttcA	1572934..1573863 (-)	930	WP_197546700.1	tRNA 2-thiocytidine(32) synthetase TtcA	-
INQ00_RS07675 (INQ00_07680)	ftnA	1574202..1574702 (-)	501	WP_197546701.1	non-heme ferritin	-
INQ00_RS07680 (INQ00_07685)	ftnA	1574723..1575208 (-)	486	WP_005699391.1	non-heme ferritin	-
INQ00_RS07685 (INQ00_07690)	sbcB	1575977..1577398 (-)	1422	WP_197546702.1	exodeoxyribonuclease I	Machinery gene
INQ00_RS07690 (INQ00_07695)	-	1577401..1578273 (-)	873	WP_193476045.1	DMT family transporter	-

Sequence

Protein

• Length: 473 a.a.
• Molecular weight: 54622.06 Da
• Isoelectric Point: 5.5480

>NTDB_id=436343 INQ00_RS07685 WP_197546702.1 1575977..1577398(-) (sbcB) [Haemophilus parainfluenzae strain M1C160_1]
MANNFSFFIYDYESFGINPASDRPAQFAGIRTDADFNIIGEPIMLYCKQTNDYLPAPEAVMVTGITPQECNEKGIPEPEF
AAKILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWKNGNSRWDLLDLVRACYALRPEGINWAYDDDGMPSF
RLEKLTKANGIEHENAHDAMADVYATIAMAKLIKEKQPKLFQFFFNHRGKKEIEKLIDTAEMTPLVHVSGMLGNYRGNCA
WVAPLAWHPTNQNAVIVCDLSGDIDNLLSKSTVDLRQDLYTKKSELEERGVSSVPLKLVHINKCPILAPAKTLLPENAAR
LGIDRQHCLDNLAKLRQSLDIREKVIEIFSEEREFEPSDNVETELYNGFFSNADKNNMAILRDLPPEKLAEHGLAFEDKR
IPKLLFHYRARHFYKTLNRAEQIKWQKYRQRKLEQSAVKFEESLQRLAEEYSDNPTKLNLLQQVYEYGTKLLS

Nucleotide

• Length: 1422 bp

>NTDB_id=436343 INQ00_RS07685 WP_197546702.1 1575977..1577398(-) (sbcB) [Haemophilus parainfluenzae strain M1C160_1]
ATGGCAAACAATTTTAGTTTTTTTATCTACGATTACGAAAGTTTTGGTATCAATCCGGCAAGTGATCGTCCTGCTCAATT
TGCTGGTATTCGTACCGATGCAGATTTCAATATCATTGGTGAGCCTATTATGTTGTATTGCAAGCAAACCAATGATTATT
TGCCGGCTCCAGAGGCCGTAATGGTCACAGGAATCACGCCACAAGAATGTAATGAAAAGGGGATTCCTGAACCTGAATTT
GCCGCAAAAATTCTAGCTGAATTTTCACAACCTAATACTTGTGTGATGGGTTACAACAACATTCGTTATGACGATGAAAT
GACTCGTTACACCTTTTACCGCAATTTTATTGATCCCTATGAATATAGCTGGAAAAATGGCAATTCTCGTTGGGATTTAC
TGGATTTGGTCCGGGCTTGCTATGCACTGCGTCCAGAAGGGATAAATTGGGCTTATGACGATGATGGTATGCCAAGCTTT
CGCTTAGAAAAACTCACTAAAGCAAATGGTATTGAGCATGAAAATGCCCATGATGCGATGGCGGATGTGTATGCAACCAT
CGCTATGGCTAAATTAATCAAAGAAAAGCAGCCTAAATTATTTCAATTCTTCTTTAATCATAGAGGTAAAAAGGAAATTG
AGAAACTGATTGATACCGCGGAAATGACACCATTAGTGCACGTTTCTGGCATGTTAGGGAATTATCGTGGCAATTGTGCT
TGGGTGGCACCATTAGCATGGCATCCAACTAATCAAAATGCCGTAATCGTCTGTGATTTATCAGGTGATATAGATAATTT
ACTCAGTAAAAGTACGGTTGATTTGCGACAAGATTTATATACCAAGAAAAGCGAGTTAGAAGAAAGGGGAGTTTCATCAG
TTCCATTAAAATTAGTTCATATTAATAAATGCCCAATTTTGGCGCCTGCAAAAACGTTACTGCCAGAAAATGCAGCTCGT
TTAGGGATAGACAGACAACATTGCTTAGATAATTTAGCAAAATTGCGCCAATCCTTAGATATTCGCGAGAAAGTTATTGA
AATCTTCTCAGAAGAACGTGAATTTGAGCCGAGCGATAATGTAGAAACGGAGCTTTATAACGGTTTCTTTAGCAATGCCG
ATAAAAACAATATGGCTATTTTACGTGATTTACCACCTGAAAAATTAGCTGAGCATGGTTTAGCATTTGAAGATAAACGA
ATTCCAAAATTGTTATTCCATTATCGTGCAAGACATTTCTATAAAACGCTAAATCGTGCAGAGCAAATCAAATGGCAAAA
ATATCGCCAACGTAAATTAGAACAAAGTGCGGTTAAATTTGAGGAAAGTTTACAACGATTAGCAGAGGAATATTCGGATA
ATCCAACCAAACTGAATTTACTGCAACAGGTTTATGAATACGGTACAAAACTGTTATCTTAA

Domains

Predicted by InterProScan.

• Exonuclease C-terminal (ExoI_SH3) (208-469)

• Exonuclease (RNase_T) (9-188)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	55.794	98.52	0.55