Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   INQ00_RS03750 Genome accession   NZ_CP063110
Coordinates   757113..757655 (+) Length   180 a.a.
NCBI ID   WP_054420357.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M1C160_1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 752113..762655
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INQ00_RS03730 (INQ00_03735) - 752148..752993 (-) 846 WP_197547332.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  INQ00_RS03735 (INQ00_03740) - 753057..755669 (-) 2613 WP_197547333.1 penicillin-binding protein 1A -
  INQ00_RS03740 (INQ00_03745) comA 755769..756611 (+) 843 WP_197547334.1 competence protein ComA Machinery gene
  INQ00_RS03745 (INQ00_03750) comB 756604..757116 (+) 513 WP_054420356.1 hypothetical protein Machinery gene
  INQ00_RS03750 (INQ00_03755) comC 757113..757655 (+) 543 WP_054420357.1 hypothetical protein Machinery gene
  INQ00_RS03755 (INQ00_03760) - 757655..758038 (+) 384 WP_197547335.1 pilus assembly protein PilP -
  INQ00_RS03760 (INQ00_03765) comE 758040..759422 (+) 1383 WP_197547336.1 type IV pilus secretin PilQ Machinery gene
  INQ00_RS03765 (INQ00_03770) - 759443..760132 (+) 690 WP_197547337.1 ComF family protein -
  INQ00_RS03770 (INQ00_03775) nfuA 760246..760830 (+) 585 WP_014064659.1 Fe-S biogenesis protein NfuA -
  INQ00_RS03775 (INQ00_03780) comM 760874..762403 (-) 1530 WP_070776023.1 YifB family Mg chelatase-like AAA ATPase Machinery gene

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 21119.15 Da        Isoelectric Point: 6.4920

>NTDB_id=436319 INQ00_RS03750 WP_054420357.1 757113..757655(+) (comC) [Haemophilus parainfluenzae strain M1C160_1]
MRNFIHELVQKSAQSWFGRWLRLPQMVHAAFWLSALSAVIFLPVFRYVENSNERHRLDAELSLQQQEWDKQEKILQTLRQ
KSDSRQLSPELANSVLPINQHVQALLNGRLRALDLRWDFSQHTLLHLSLQGYFVDLQQFLTALLNDVPTLSLTQLNIEKL
DEEENASITCELIFQLNKDK

Nucleotide


Download         Length: 543 bp        

>NTDB_id=436319 INQ00_RS03750 WP_054420357.1 757113..757655(+) (comC) [Haemophilus parainfluenzae strain M1C160_1]
ATGAGGAACTTTATCCATGAGCTTGTTCAAAAAAGTGCACAAAGTTGGTTTGGGAGATGGCTTCGATTACCTCAAATGGT
CCATGCTGCCTTTTGGTTGAGTGCATTAAGTGCGGTCATCTTTTTACCTGTTTTTCGTTACGTTGAAAATAGCAACGAAC
GACATCGACTTGACGCAGAATTGAGTTTGCAGCAGCAAGAGTGGGATAAACAGGAAAAGATTTTACAAACCTTAAGGCAA
AAGTCAGACAGCCGACAACTTTCTCCAGAATTAGCTAATTCTGTGTTGCCAATTAATCAGCATGTACAGGCGTTATTAAA
TGGGCGACTTCGAGCGTTGGATTTACGTTGGGATTTTTCTCAACATACTTTGTTGCATTTGTCATTGCAAGGCTATTTTG
TCGATTTACAGCAATTTTTGACCGCACTTTTAAACGATGTTCCTACACTTTCTTTAACTCAATTAAACATTGAGAAATTA
GATGAAGAGGAAAATGCTTCTATTACATGCGAGTTAATTTTCCAACTAAATAAGGACAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Haemophilus influenzae 86-028NP

42.331

90.556

0.383
  comC Haemophilus influenzae Rd KW20

41.718

90.556

0.378