Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HF575_RS21430 Genome accession   NZ_CP051158
Coordinates   4515842..4516471 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 17MR471     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4510842..4521471
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HF575_RS21415 (HF575_21445) helD 4511084..4513138 (-) 2055 WP_000420536.1 DNA helicase IV -
  HF575_RS21420 (HF575_21450) yccF 4513261..4513707 (+) 447 WP_001261235.1 YccF domain-containing protein -
  HF575_RS21425 (HF575_21455) yccS 4513717..4515879 (+) 2163 WP_000875061.1 YccS family putative transporter -
  HF575_RS21430 (HF575_21460) sxy/tfoX 4515842..4516471 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  HF575_RS21435 (HF575_21465) sulA 4516690..4517199 (+) 510 WP_000288706.1 SOS-induced cell division inhibitor SulA -
  HF575_RS21440 (HF575_21470) ompA 4517556..4518608 (+) 1053 WP_001361736.1 porin OmpA -
  HF575_RS21445 (HF575_21475) matP 4518684..4519136 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  HF575_RS21450 (HF575_21480) ycbZ 4519322..4521082 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=436310 HF575_RS21430 WP_000839153.1 4515842..4516471(-) (sxy/tfoX) [Escherichia coli strain 17MR471]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=436310 HF575_RS21430 WP_000839153.1 4515842..4516471(-) (sxy/tfoX) [Escherichia coli strain 17MR471]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGATGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1