Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   IL983_RS27705 Genome accession   NZ_CP063047
Coordinates   6032648..6033373 (-) Length   241 a.a.
NCBI ID   WP_034035955.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain KC-Tt-1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6027648..6038373
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IL983_RS27680 (IL983_27680) - 6028120..6028635 (+) 516 WP_003084789.1 glycine cleavage system protein R -
  IL983_RS27685 (IL983_27685) rarD 6029325..6030221 (-) 897 WP_003121788.1 EamA family transporter RarD -
  IL983_RS27690 (IL983_27690) - 6030424..6031398 (-) 975 WP_003129062.1 serine/threonine protein kinase -
  IL983_RS27695 (IL983_27695) - 6031460..6032218 (-) 759 WP_003103305.1 TOBE domain-containing protein -
  IL983_RS27700 (IL983_27700) - 6032286..6032606 (-) 321 WP_004365177.1 YfiM family lipoprotein -
  IL983_RS27705 (IL983_27705) comF 6032648..6033373 (-) 726 WP_034035955.1 ComF family protein Machinery gene
  IL983_RS27710 (IL983_27710) - 6033512..6033805 (-) 294 WP_003084806.1 hypothetical protein -
  IL983_RS27715 (IL983_27715) - 6033859..6034785 (-) 927 WP_003118849.1 LysR family transcriptional regulator -
  IL983_RS27720 (IL983_27720) - 6034903..6035661 (+) 759 WP_034035953.1 5-oxoprolinase subunit PxpA -
  IL983_RS27725 (IL983_27725) - 6035738..6035986 (+) 249 WP_003111233.1 acetyl-CoA carboxylase -
  IL983_RS27730 (IL983_27730) - 6035997..6037373 (+) 1377 WP_034035951.1 acetyl-CoA carboxylase biotin carboxylase subunit -
  IL983_RS27735 (IL983_27735) - 6037375..6038253 (+) 879 WP_034035950.1 5-oxoprolinase subunit B family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27000.44 Da        Isoelectric Point: 10.8076

>NTDB_id=436290 IL983_RS27705 WP_034035955.1 6032648..6033373(-) (comF) [Pseudomonas aeruginosa strain KC-Tt-1]
MSFPLRPLTRWLLPPPACLLCAARSDQPPRPLCRACAADLPWSRQQCRRCALPLPLDGQVCGECLRRPPAYEQAIAPWRY
AFPLDSLINRFKHQAAWPLGRLLGELLAEHLRQRYAEGLPRPARLLPVPLAPRRERRRGFNQAQQLAERLAGELDLRSDP
HSLRRVLDTPAQQGLDATVRRRNLRHAFALAPASDVRGLHLALVDDVLTTGATAECLSHLLRRAGAARVDVYCLARTPKP
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=436290 IL983_RS27705 WP_034035955.1 6032648..6033373(-) (comF) [Pseudomonas aeruginosa strain KC-Tt-1]
ATGTCGTTCCCGCTTCGTCCTCTCACGCGCTGGCTTTTGCCGCCGCCGGCCTGCCTGCTCTGCGCCGCCCGCAGCGACCA
GCCGCCCCGCCCGCTGTGCCGCGCCTGTGCCGCCGACCTGCCCTGGTCGCGCCAGCAGTGCCGGCGCTGCGCCCTGCCCC
TGCCGCTGGACGGCCAGGTGTGCGGCGAGTGCCTGCGCCGCCCGCCGGCCTATGAACAGGCGATCGCGCCCTGGCGCTAC
GCCTTTCCGCTCGACAGCCTGATCAACCGCTTCAAGCACCAGGCGGCCTGGCCGCTGGGGCGGCTGCTCGGCGAGTTGCT
GGCGGAACACCTGCGGCAACGCTACGCCGAAGGCCTGCCGCGCCCGGCACGCCTGCTGCCGGTCCCGCTGGCGCCACGGC
GCGAACGTCGGCGCGGCTTCAACCAGGCGCAACAGCTCGCCGAGCGACTGGCCGGCGAGCTGGACCTGCGCAGCGATCCG
CACAGCCTGCGGCGAGTGCTGGATACGCCGGCCCAGCAGGGCCTGGACGCGACGGTGCGGCGGCGCAACCTGCGCCACGC
CTTCGCCCTGGCGCCCGCCAGCGATGTTCGCGGGCTGCACCTGGCACTGGTGGACGACGTGCTCACCACCGGGGCCACCG
CCGAGTGCCTTTCCCATCTGTTGCGCCGGGCGGGCGCCGCGCGGGTCGACGTCTACTGCCTGGCGCGCACGCCGAAGCCC
GGCTGA

Domains

Predicted by InterProScan.

Double zinc ribbon domain (DZR_2)

(9-65)

Phosphoribosyl transferase domain (Pribosyltran)

(137-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

38.174

100

0.382
  comFC Legionella pneumophila str. Paris

37.826

95.436

0.361