Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   IL983_RS07835 Genome accession   NZ_CP063047
Coordinates   1672734..1672925 (+) Length   63 a.a.
NCBI ID   WP_312845070.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain KC-Tt-1     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1667734..1677925
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IL983_RS07810 (IL983_07810) ihfA 1668562..1668864 (+) 303 WP_003090661.1 integration host factor subunit alpha -
  IL983_RS07815 (IL983_07815) - 1668845..1669201 (+) 357 WP_003090655.1 MerR family transcriptional regulator -
  IL983_RS07825 (IL983_07825) - 1670141..1671267 (-) 1127 Protein_1550 IS3 family transposase -
  IL983_RS07830 (IL983_07830) - 1671641..1672630 (-) 990 WP_034035412.1 DNA-methyltransferase -
  IL983_RS07835 (IL983_07835) sinR 1672734..1672925 (+) 192 WP_312845070.1 helix-turn-helix transcriptional regulator Regulator
  IL983_RS07840 (IL983_07840) - 1672922..1673485 (+) 564 WP_079390123.1 restriction endonuclease -
  IL983_RS28815 - 1674234..1674686 (+) 453 WP_232095718.1 IS110 family transposase -
  IL983_RS07850 (IL983_07850) - 1674653..1674856 (+) 204 Protein_1555 IS3 family transposase -
  IL983_RS07855 (IL983_07855) - 1674890..1676746 (-) 1857 WP_034035403.1 DUF2075 domain-containing protein -
  IL983_RS07860 (IL983_07860) - 1676774..1677154 (-) 381 WP_023091645.1 nucleotide pyrophosphohydrolase -
  IL983_RS07865 (IL983_07865) - 1677552..1677776 (-) 225 WP_031652638.1 SymE family type I addiction module toxin -

Sequence

Protein


Download         Length: 63 a.a.        Molecular weight: 6856.78 Da        Isoelectric Point: 5.0035

>NTDB_id=436215 IL983_RS07835 WP_312845070.1 1672734..1672925(+) (sinR) [Pseudomonas aeruginosa strain KC-Tt-1]
MNLRIARGRLGLSQEALADAAGLHRTYVGSVERGERNISIDNIERLAIALDVSPASLLEEPKE

Nucleotide


Download         Length: 192 bp        

>NTDB_id=436215 IL983_RS07835 WP_312845070.1 1672734..1672925(+) (sinR) [Pseudomonas aeruginosa strain KC-Tt-1]
GTGAACCTGAGGATCGCGCGGGGGAGGCTCGGGCTGTCGCAGGAGGCATTGGCCGACGCGGCGGGTCTGCACCGGACCTA
CGTTGGTTCGGTGGAGCGAGGTGAGCGAAACATCTCCATCGACAACATCGAGCGGCTGGCAATCGCCCTGGACGTTTCTC
CCGCATCACTGCTGGAGGAACCAAAGGAATGA

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(3-55)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

37.097

98.413

0.365