Detailed information NTG0436198

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: IL983_RS03175
• Genome accession: NZ_CP063047
• Coordinates: 708843..709847 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain KC-Tt-1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 703843..714847

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IL983_RS03145 (IL983_03145)	fghA	703935..704786 (+)	852	WP_009876912.1	S-formylglutathione hydrolase	-
IL983_RS03150 (IL983_03150)	ispF	704857..705330 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
IL983_RS03155 (IL983_03155)	truD	705327..706394 (+)	1068	WP_004345456.1	tRNA pseudouridine(13) synthase TruD	-
IL983_RS03160 (IL983_03160)	surE	706382..707131 (+)	750	WP_034035732.1	5'/3'-nucleotidase SurE	-
IL983_RS03165 (IL983_03165)	-	707164..707799 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
IL983_RS03170 (IL983_03170)	-	707845..708738 (+)	894	WP_003138035.1	peptidoglycan DD-metalloendopeptidase family protein	-
IL983_RS03175 (IL983_03175)	rpoS	708843..709847 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
IL983_RS03180 (IL983_03180)	fdxA	710274..710597 (-)	324	WP_003092272.1	ferredoxin FdxA	-
IL983_RS03185 (IL983_03185)	mutS	710664..713231 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
IL983_RS03190 (IL983_03190)	-	713357..714364 (-)	1008	WP_012613731.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=436198 IL983_RS03175 WP_003113871.1 708843..709847(+) (rpoS) [Pseudomonas aeruginosa strain KC-Tt-1]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=436198 IL983_RS03175 WP_003113871.1 708843..709847(+) (rpoS) [Pseudomonas aeruginosa strain KC-Tt-1]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCTGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGTCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653