Detailed information NTG0043619

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: LPO_RS05945
• Genome accession: NC_018139
• Coordinates: 1307417..1308442 (+)
• Length: 341 a.a.
• NCBI ID: WP_011213596.1
• Uniprot ID: -
• Organism: Legionella pneumophila subsp. pneumophila
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1302417..1313442

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LPO_RS05915 (LPO_1263)	-	1302849..1303166 (+)	318	WP_011215326.1	DUF2845 domain-containing protein	-
LPO_RS05920 (LPO_1264)	-	1303202..1303573 (+)	372	WP_010947010.1	protease inhibitor I42 family protein	-
LPO_RS05925 (LPO_1265)	-	1303621..1305345 (-)	1725	WP_014841464.1	NAD-dependent malic enzyme	-
LPO_RS05930 (LPO_1266)	-	1305425..1305808 (+)	384	WP_011213593.1	hypothetical protein	-
LPO_RS05935 (LPO_1267)	surE	1305811..1306569 (+)	759	WP_014841465.1	5'/3'-nucleotidase SurE	-
LPO_RS05940 (LPO_1268)	-	1306588..1307331 (+)	744	WP_011213595.1	peptidoglycan DD-metalloendopeptidase family protein	-
LPO_RS05945 (LPO_1269)	rpoS	1307417..1308442 (+)	1026	WP_011213596.1	RNA polymerase sigma factor RpoS	Regulator
LPO_RS05950 (LPO_1270)	hmgA	1308545..1309795 (-)	1251	WP_014841466.1	homogentisate 1,2-dioxygenase	-
LPO_RS05955 (LPO_1271)	-	1309942..1310685 (+)	744	WP_011213598.1	YebC/PmpR family DNA-binding transcriptional regulator	-
LPO_RS05960 (LPO_1272)	ruvC	1310685..1311209 (+)	525	WP_011946342.1	crossover junction endodeoxyribonuclease RuvC	-
LPO_RS05965 (LPO_1273)	ruvA	1311206..1311805 (+)	600	WP_014841467.1	Holliday junction branch migration protein RuvA	-
LPO_RS05970 (LPO_1274)	-	1311855..1312175 (+)	321	WP_014841468.1	hypothetical protein	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 39433.70 Da
• Isoelectric Point: 4.3732

>NTDB_id=43619 LPO_RS05945 WP_011213596.1 1307417..1308442(+) (rpoS) [Legionella pneumophila subsp. pneumophila]
MQDEEEPIKDKEFKEEEWSEPDDDSLLSEEDIEPDIEKMEEELDELPEFTDDEAFPSFQRGKNIAKALDATQLYLGEIGF
SPLLTAEEEIHYATLALKGDMEARKKMIESNLRLVVKIARRYLNRGLPLLDLIEEGNLGLMKSVEKFDPKRGFRFSTYAT
WWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRAARQLTQKLDHEPSPEEIAEMVDKPLEDVQKLLGLNDKVASVDTPIG
FDETKSLLDTIADENSLNPAELLTNENLRQHIESLLDKLTENQQQVIARRFGLRGFEKATLEDVGKEIDLTRERVRQIQV
EALKTLRTLLERVGLTQEDLF

Nucleotide

• Length: 1026 bp

>NTDB_id=43619 LPO_RS05945 WP_011213596.1 1307417..1308442(+) (rpoS) [Legionella pneumophila subsp. pneumophila]
ATGCAAGATGAAGAAGAGCCAATTAAGGACAAGGAATTTAAAGAAGAGGAATGGTCTGAGCCAGATGATGACTCTCTGTT
GTCAGAAGAGGATATTGAACCTGATATCGAAAAAATGGAAGAAGAGCTTGATGAACTTCCAGAGTTTACTGATGATGAAG
CTTTTCCTTCATTCCAGCGCGGGAAAAATATTGCCAAGGCTTTAGATGCGACTCAACTTTACTTGGGTGAAATTGGTTTT
TCTCCTTTGCTAACGGCTGAAGAAGAAATCCATTATGCGACTCTTGCTTTAAAAGGTGATATGGAAGCACGCAAGAAAAT
GATTGAGTCGAATTTGCGCCTGGTGGTTAAAATAGCCAGACGTTATCTTAATAGAGGTTTACCTCTTCTGGATCTAATCG
AAGAGGGTAACCTGGGTTTAATGAAGTCTGTTGAGAAATTTGACCCCAAGCGAGGATTCCGTTTTTCAACTTATGCGACC
TGGTGGATTAGGCAAACTATTGAGCGCGCAATTATGAATCAAACGAGAACTATCCGTTTGCCTATTCATGTCGTGAAAGA
ACTTAATGTTTATCTCAGAGCGGCAAGGCAATTGACGCAAAAACTGGATCATGAACCATCACCTGAAGAAATAGCAGAAA
TGGTGGATAAGCCTTTGGAGGATGTCCAAAAATTATTGGGATTGAATGATAAAGTCGCTTCAGTTGATACTCCAATTGGA
TTTGATGAAACCAAATCTTTATTAGATACAATTGCTGATGAAAACAGTTTAAATCCTGCAGAGCTGCTAACCAATGAGAA
TTTAAGGCAGCATATAGAATCTCTTCTGGATAAATTAACTGAGAATCAACAGCAGGTTATCGCAAGACGTTTTGGGTTAA
GAGGTTTTGAAAAAGCGACACTGGAAGACGTTGGTAAGGAAATTGATTTGACCCGAGAACGCGTTCGCCAAATTCAAGTT
GAAGCTTTGAAGACACTTAGAACTTTGTTAGAGCGGGTTGGACTAACACAAGAGGATTTGTTTTGA

Domains

Predicted by InterProScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (69-101)

• Sigma-70 region 3 (Sigma70_r3) (187-261)

• Sigma-70 region 2 (Sigma70_r2) (107-176)

• Sigma-70, region 4 (Sigma70_r4) (275-327)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	67.509	81.232	0.548