Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   HIB_RS05685 Genome accession   NC_016809
Coordinates   1105503..1106186 (+) Length   227 a.a.
NCBI ID   WP_015701955.1    Uniprot ID   -
Organism   Haemophilus influenzae 10810     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1100503..1111186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HIB_RS05660 (HIB_10730) - 1100711..1101241 (-) 531 WP_015701952.1 DsbE family thiol:disulfide interchange protein -
  HIB_RS05665 (HIB_10740) nrfE 1101241..1103148 (-) 1908 WP_015701953.1 heme lyase NrfEFG subunit NrfE -
  HIB_RS05670 (HIB_10750) suhB 1103257..1104060 (-) 804 WP_015701954.1 inositol-1-monophosphatase -
  HIB_RS05675 (HIB_10760) comN 1104260..1104772 (+) 513 WP_013526183.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  HIB_RS05680 (HIB_10770) comO 1104772..1105488 (+) 717 WP_012055311.1 type II secretion system protein J Machinery gene
  HIB_RS05685 (HIB_10780) comP 1105503..1106186 (+) 684 WP_015701955.1 DUF2572 family protein Machinery gene
  HIB_RS05690 (HIB_10790) comQ 1106179..1106466 (+) 288 WP_005648029.1 DUF5374 domain-containing protein Machinery gene
  HIB_RS05695 (HIB_10800) recC 1106512..1109892 (+) 3381 WP_015701956.1 exodeoxyribonuclease V subunit gamma -
  HIB_RS05700 (HIB_10810) nrdR 1109947..1110396 (+) 450 WP_005648026.1 transcriptional regulator NrdR -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 25531.46 Da        Isoelectric Point: 9.2669

>NTDB_id=43616 HIB_RS05685 WP_015701955.1 1105503..1106186(+) (comP) [Haemophilus influenzae 10810]
MTIQKGIITLTILIFISGLLTVILLLDDSHLSFFRAQQNQRKHYVERTLQLQKMTEEKKQTACIDLPLNNNERVKQISIA
LEGAADAIQYFLWCERMSLFKKSPKKGDNQGALKDFVSGEKLAYFRPHFSSLPRILNANKMPKLYWFSDSQAEVEINGTV
SAVLIAEGDLKLTGKGRISGAVITSGNLTLDGVTLAYGKKTVVALVQQYSQWQLAEKSWSDFNVQDE

Nucleotide


Download         Length: 684 bp        

>NTDB_id=43616 HIB_RS05685 WP_015701955.1 1105503..1106186(+) (comP) [Haemophilus influenzae 10810]
ATGACAATACAAAAAGGCATTATCACGCTGACTATTCTGATTTTTATTTCAGGTTTATTAACCGTAATCTTATTGTTGGA
TGACAGCCATTTAAGTTTTTTTCGTGCACAACAAAATCAACGAAAACACTATGTGGAAAGAACATTACAACTACAAAAAA
TGACAGAGGAGAAAAAACAAACTGCCTGTATTGATTTACCCTTAAATAATAATGAAAGAGTGAAGCAAATCAGCATCGCC
CTTGAGGGTGCCGCCGATGCAATTCAATATTTTCTTTGGTGTGAAAGAATGAGCCTATTTAAAAAATCGCCTAAAAAGGG
AGATAATCAAGGCGCATTGAAAGATTTTGTGAGTGGCGAAAAACTTGCCTATTTTCGACCGCACTTTTCTTCCCTGCCCA
GAATTTTAAATGCGAATAAAATGCCTAAACTGTATTGGTTTTCAGATTCACAAGCAGAGGTTGAAATTAATGGCACCGTA
TCTGCCGTATTAATTGCAGAGGGCGATTTAAAATTGACTGGCAAAGGGAGGATTAGTGGCGCAGTGATTACCAGCGGGAA
TTTAACTTTAGATGGCGTAACTTTAGCTTATGGGAAAAAGACGGTGGTTGCTTTAGTGCAACAATATAGTCAGTGGCAGT
TAGCAGAAAAAAGTTGGAGTGATTTTAATGTTCAGGATGAATAA

Domains

Predicted by InterproScan.

Protein of unknown function (DUF2572) (DUF2572)

(5-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Haemophilus influenzae Rd KW20

95.154

100

0.952

Multiple sequence alignment