Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   HIB_RS05675 Genome accession   NC_016809
Coordinates   1104260..1104772 (+) Length   170 a.a.
NCBI ID   WP_013526183.1    Uniprot ID   -
Organism   Haemophilus influenzae 10810     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1099260..1109772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HIB_RS05655 (HIB_10720) nrfF 1099560..1100714 (-) 1155 WP_015701951.1 heme lyase NrfEFG subunit NrfF -
  HIB_RS05660 (HIB_10730) - 1100711..1101241 (-) 531 WP_015701952.1 DsbE family thiol:disulfide interchange protein -
  HIB_RS05665 (HIB_10740) nrfE 1101241..1103148 (-) 1908 WP_015701953.1 heme lyase NrfEFG subunit NrfE -
  HIB_RS05670 (HIB_10750) suhB 1103257..1104060 (-) 804 WP_015701954.1 inositol-1-monophosphatase -
  HIB_RS05675 (HIB_10760) comN 1104260..1104772 (+) 513 WP_013526183.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  HIB_RS05680 (HIB_10770) comO 1104772..1105488 (+) 717 WP_012055311.1 type II secretion system protein J Machinery gene
  HIB_RS05685 (HIB_10780) comP 1105503..1106186 (+) 684 WP_015701955.1 DUF2572 family protein Machinery gene
  HIB_RS05690 (HIB_10790) comQ 1106179..1106466 (+) 288 WP_005648029.1 DUF5374 domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 19849.10 Da        Isoelectric Point: 8.9743

>NTDB_id=43614 HIB_RS05675 WP_013526183.1 1104260..1104772(+) (comN) [Haemophilus influenzae 10810]
MQKGMTLVELLIGLAIISIALNFAVPLWKTDSPKTILAKEQHRLYLFLRQIQARAENSSEVWFLLINRNLATQQWCLTAQ
VKNNQTCDCLNPINCPKEVYAHFYYPYFPNKTMIQSHHIYPKEITRFDGIRNTIVTRCFILQAENERTLFLFFNVGSIRL
KTNQFDSACN

Nucleotide


Download         Length: 513 bp        

>NTDB_id=43614 HIB_RS05675 WP_013526183.1 1104260..1104772(+) (comN) [Haemophilus influenzae 10810]
ATGCAGAAAGGTATGACATTAGTGGAATTATTGATTGGGTTAGCCATTATCAGTATTGCGCTGAATTTTGCAGTACCATT
ATGGAAAACCGATTCACCTAAAACGATTTTAGCCAAAGAGCAACATCGCCTGTATTTATTTCTACGCCAAATTCAGGCTC
GTGCAGAAAATTCATCGGAAGTGTGGTTTTTACTTATCAATCGTAATCTTGCGACACAGCAATGGTGCTTAACAGCACAA
GTAAAAAATAACCAAACTTGTGATTGTTTAAATCCGATAAATTGCCCGAAAGAGGTTTATGCTCATTTTTACTACCCTTA
TTTTCCTAACAAAACGATGATTCAAAGTCATCATATTTATCCAAAAGAAATCACGAGATTTGATGGCATTCGTAATACTA
TCGTTACTCGTTGCTTTATTTTGCAAGCTGAAAATGAACGTACGTTATTTTTATTTTTCAATGTTGGCAGTATTCGTTTG
AAAACTAATCAATTTGATAGTGCTTGTAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-21)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Haemophilus influenzae Rd KW20

99.412

100

0.994

Multiple sequence alignment