Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HDB52_RS18605 Genome accession   NZ_CP051132
Coordinates   3903000..3903626 (+) Length   208 a.a.
NCBI ID   WP_017384804.1    Uniprot ID   A0AA37AJW2
Organism   Enterobacter hormaechei strain AMS-38     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3898000..3908626
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HDB52_RS18585 - 3898399..3900159 (-) 1761 WP_032647912.1 Lon protease family protein -
  HDB52_RS18590 matP 3900346..3900798 (+) 453 WP_006809347.1 macrodomain Ter protein MatP -
  HDB52_RS18595 ompA 3900864..3901916 (-) 1053 WP_017694761.1 porin OmpA -
  HDB52_RS18600 sulA 3902273..3902782 (-) 510 WP_032104231.1 SOS-induced cell division inhibitor SulA -
  HDB52_RS18605 sxy/tfoX 3903000..3903626 (+) 627 WP_017384804.1 TfoX/Sxy family DNA transformation protein Regulator
  HDB52_RS18610 yccS 3903583..3905745 (-) 2163 WP_015570895.1 YccS family putative transporter -
  HDB52_RS18615 - 3905764..3906210 (-) 447 WP_003858149.1 YccF domain-containing protein -
  HDB52_RS18620 helD 3906333..3908387 (+) 2055 WP_023296275.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24018.63 Da        Isoelectric Point: 9.4592

>NTDB_id=436135 HDB52_RS18605 WP_017384804.1 3903000..3903626(+) (sxy/tfoX) [Enterobacter hormaechei strain AMS-38]
MKKISYDRIYQSQEYLSPLGEIHHRALFGGYTLAVDEAVFAMVSDGELYLRACEQSAKYCVKNASSFLTLMKRGRPVLLN
YYRVDEGLWQNREKLLQLSSFALDAARKERYQRHQRNRLKDLPNLTFQIEVLLMEAGITNEETLRQLGAKTSWLKMRSKN
KALSIRVLFALEGAIEGLHEAALPADIRRELMEWFNALPESQGHHSAR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=436135 HDB52_RS18605 WP_017384804.1 3903000..3903626(+) (sxy/tfoX) [Enterobacter hormaechei strain AMS-38]
ATGAAAAAGATATCTTATGATCGGATTTATCAATCTCAAGAATACCTCTCTCCGCTGGGCGAAATTCATCATCGCGCCCT
GTTTGGCGGTTATACCCTGGCCGTGGATGAAGCGGTGTTCGCGATGGTGTCTGACGGCGAGCTGTACCTTCGCGCCTGTG
AGCAAAGTGCAAAATACTGTGTAAAAAACGCCTCCTCTTTTCTGACACTGATGAAACGAGGACGGCCAGTGCTGCTTAAT
TACTACCGTGTGGATGAAGGTCTGTGGCAAAACAGGGAAAAGCTGCTTCAGCTCTCCTCGTTTGCGCTCGATGCCGCCAG
GAAAGAGCGCTACCAGCGCCATCAGCGTAATCGGCTTAAGGATCTGCCGAACCTGACCTTTCAGATTGAGGTCCTGCTTA
TGGAGGCGGGCATTACCAATGAAGAGACGCTACGACAGTTGGGGGCGAAGACGAGCTGGCTGAAAATGCGCTCTAAGAAT
AAAGCGCTGAGTATCCGGGTATTGTTCGCGCTTGAAGGCGCCATCGAAGGGTTACATGAAGCGGCACTCCCGGCGGATAT
TCGCCGGGAGCTTATGGAGTGGTTTAATGCGCTGCCTGAGTCGCAGGGCCATCATTCCGCCAGGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.911

97.115

0.572