Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   HIB_RS04210 Genome accession   NC_016809
Coordinates   805065..805361 (-) Length   98 a.a.
NCBI ID   WP_005650837.1    Uniprot ID   Q4QMQ7
Organism   Haemophilus influenzae 10810     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 800065..810361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HIB_RS04185 (HIB_07840) - 800476..801033 (-) 558 WP_015701788.1 DNA-3-methyladenine glycosylase I -
  HIB_RS04190 (HIB_07850) aroE 801030..801848 (-) 819 WP_015701789.1 shikimate dehydrogenase -
  HIB_RS04195 (HIB_07860) - 801852..802403 (-) 552 WP_015701790.1 Sua5/YciO/YrdC/YwlC family protein -
  HIB_RS04200 (HIB_07870) - 802419..802955 (-) 537 WP_015701791.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  HIB_RS04205 (HIB_07880) - 802965..804881 (-) 1917 WP_015701792.1 ABC transporter ATP-binding protein -
  HIB_RS04210 (HIB_07890) HI0659 805065..805361 (-) 297 WP_005650837.1 helix-turn-helix domain-containing protein Machinery gene
  HIB_RS04215 (HIB_07900) - 805354..805713 (-) 360 WP_015701793.1 type II toxin-antitoxin system RelE/ParE family toxin -
  HIB_RS04220 (HIB_07910) - 805983..808952 (-) 2970 WP_015701794.1 TonB-dependent hemoglobin/transferrin/lactoferrin family receptor -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 11092.94 Da        Isoelectric Point: 10.3139

>NTDB_id=43610 HIB_RS04210 WP_005650837.1 805065..805361(-) (HI0659) [Haemophilus influenzae 10810]
MNKISPLGSNWNEFEQQIFNEEEIRESNLRVALIKELITSRQQLGISQKQLETLSGVKQPMIARIEKGQTNPQLETLLKL
LAPLGKTLSIVPLRVKNA

Nucleotide


Download         Length: 297 bp        

>NTDB_id=43610 HIB_RS04210 WP_005650837.1 805065..805361(-) (HI0659) [Haemophilus influenzae 10810]
ATGAATAAAATCAGCCCATTAGGTTCAAATTGGAATGAGTTTGAACAGCAAATTTTCAATGAAGAAGAAATCCGAGAAAG
TAATTTGCGTGTAGCCTTAATTAAAGAATTGATTACTTCTCGCCAGCAACTTGGGATTTCCCAAAAACAACTTGAAACCT
TAAGCGGTGTGAAGCAACCTATGATTGCACGCATTGAAAAAGGACAAACGAATCCTCAGCTTGAAACGTTGTTAAAATTG
CTCGCTCCCTTGGGGAAAACCCTGTCGATTGTGCCTCTAAGGGTAAAAAATGCCTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(41-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q4QMQ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

100

100

1

Multiple sequence alignment