Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   HCM98_RS29305 Genome accession   NZ_CP051013
Coordinates   5589250..5589534 (-) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus tropicus strain LM1212-DB     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 5584250..5594534
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HCM98_RS29270 (HCM98_29300) tmk 5584401..5585027 (+) 627 WP_000677237.1 dTMP kinase -
  HCM98_RS29275 (HCM98_29305) holB 5585063..5586046 (+) 984 WP_000978579.1 DNA polymerase III subunit delta' -
  HCM98_RS29280 (HCM98_29310) - 5586052..5586879 (+) 828 WP_000272429.1 stage 0 sporulation family protein -
  HCM98_RS29285 (HCM98_29315) yabA 5586894..5587247 (+) 354 WP_000412055.1 DNA replication initiation control protein YabA -
  HCM98_RS29290 (HCM98_29320) - 5587368..5588108 (+) 741 WP_029439095.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  HCM98_RS29295 (HCM98_29325) - 5588095..5588385 (+) 291 WP_029439096.1 GIY-YIG nuclease family protein -
  HCM98_RS29300 (HCM98_29330) rsmI 5588354..5589229 (+) 876 WP_029439097.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  HCM98_RS29305 (HCM98_29335) abrB 5589250..5589534 (-) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  HCM98_RS29310 (HCM98_29340) metG 5590053..5592035 (+) 1983 WP_029439098.1 methionine--tRNA ligase -
  HCM98_RS29315 (HCM98_29345) - 5592202..5592969 (+) 768 WP_029439099.1 TatD family hydrolase -
  HCM98_RS29320 (HCM98_29350) rnmV 5593184..5593741 (+) 558 WP_000692830.1 ribonuclease M5 -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=436097 HCM98_RS29305 WP_000843036.1 5589250..5589534(-) (abrB) [Bacillus tropicus strain LM1212-DB]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=436097 HCM98_RS29305 WP_000843036.1 5589250..5589534(-) (abrB) [Bacillus tropicus strain LM1212-DB]
ATGAAATCTACTGGTATCGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGATGCTCTTGAAATCTACGTTGATGACGAGAAAATCATCTTAAAAAAATATAAGCCAAACATGACTT
GCCAAGTAACAGGTGAAGTATCTGATGGTAACCTATCTTTAGCTGAAGGTAAAATTATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAACTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851