Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   HCM98_RS29105 Genome accession   NZ_CP051013
Coordinates   5551839..5552966 (+) Length   375 a.a.
NCBI ID   WP_000470753.1    Uniprot ID   Q6I535
Organism   Bacillus tropicus strain LM1212-DB     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5546839..5557966
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HCM98_RS29075 (HCM98_29105) spoIIIJ 5546884..5547651 (-) 768 WP_029440295.1 YidC family membrane integrase SpoIIIJ -
  HCM98_RS29080 (HCM98_29110) rnpA 5547704..5548051 (-) 348 WP_029440294.1 ribonuclease P protein component -
  HCM98_RS29085 (HCM98_29115) rpmH 5548128..5548262 (-) 135 WP_000831901.1 50S ribosomal protein L34 -
  HCM98_RS29090 (HCM98_29120) dnaA 5548828..5550168 (+) 1341 WP_000428025.1 chromosomal replication initiator protein DnaA -
  HCM98_RS29095 (HCM98_29125) dnaN 5550347..5551486 (+) 1140 WP_001212891.1 DNA polymerase III subunit beta -
  HCM98_RS29100 (HCM98_29130) yaaA 5551614..5551826 (+) 213 WP_000821367.1 S4 domain-containing protein YaaA -
  HCM98_RS29105 (HCM98_29135) recF 5551839..5552966 (+) 1128 WP_000470753.1 DNA replication/repair protein RecF Machinery gene
  HCM98_RS29110 (HCM98_29140) gyrB 5553005..5554927 (+) 1923 WP_033694820.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  HCM98_RS29115 (HCM98_29145) gyrA 5555016..5557487 (+) 2472 WP_029440292.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 43362.71 Da        Isoelectric Point: 6.9850

>NTDB_id=436095 HCM98_RS29105 WP_000470753.1 5551839..5552966(+) (recF) [Bacillus tropicus strain LM1212-DB]
MFISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIRWDEDFGQIKGKLQKRNSS
LSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQR
NHLLKKMQGNSKNEETMLDVFTLQLIEHGTKILRKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESMDLSKI
KEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQVFGSQGQQRTTALSLKLAEIELIYSEVKEYPILLLDDVLS
ELDDYRQSHLLNTIQGKVQTFVTTTSVDGIEHETLKEAKTIHVTNGTVDCEIDRA

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=436095 HCM98_RS29105 WP_000470753.1 5551839..5552966(+) (recF) [Bacillus tropicus strain LM1212-DB]
TTGTTTATTTCAGAAATACAATTAAAAAACTATCGCAATTATGAAAAATTAGAGCTTTCCTTTGAAGATAAGGTAAATGT
AATTATCGGCGAAAATGCGCAAGGGAAAACGAATTTGATGGAAGCTATTTATGTTTTAGCGATGGCAAAATCTCATAGAA
CCTCTAATGATCGTGAGCTTATCCGTTGGGATGAAGATTTCGGTCAAATTAAAGGGAAGTTACAAAAGAGAAATAGTTCT
TTGTCTTTGGAATTAAATATCTCTAAAAAAGGTAAAAAGGCAAAATTAAATCAACTTGAACAACAAAAATTGAGTCAATA
TATTGGCGTGATGAATGTTGTCATGTTTGCCCCAGAAGATTTAAATCTTGTAAAAGGAAGCCCTCAAGTAAGAAGACGCT
TTTTAGATATGGAATTAGGCCAAATAGCTCCGGTCTATTTGTACGAATTGAGTCAATATCAAAAGGTGCTCACACAACGA
AATCACTTGCTGAAAAAGATGCAAGGGAATAGTAAGAATGAGGAAACGATGTTGGATGTATTTACACTTCAACTTATTGA
GCATGGTACAAAAATATTGCGAAAACGCTTTGAATTTTTGCATTTACTACAAGAATGGGCAGCTCCAATTCATCGTGGTA
TAAGCCGTGGATTAGAAGAATTAGAAATTGTCTATAAACCGAGTGTAGATGTATCAGAATCAATGGATTTGTCGAAAATA
AAAGAAGTATACTATGAAAGTTTTCAATCAGTGAAACAACGTGAAATTTTCCGTGGTACGACTTTAATTGGTCCTCATCG
TGATGATTTACAATTCTTCGTTAATAGTAAAAATGTTCAAGTCTTTGGTTCGCAAGGACAACAACGAACGACCGCACTGT
CCCTAAAATTAGCTGAAATTGAATTGATTTACTCAGAAGTTAAGGAATATCCGATTCTTTTATTGGATGATGTATTATCA
GAATTAGATGATTATCGTCAATCGCATCTGTTAAATACAATTCAAGGAAAAGTGCAAACATTTGTGACAACGACGAGTGT
CGACGGAATTGAACACGAAACATTAAAAGAAGCGAAAACAATTCATGTAACGAACGGCACGGTAGATTGTGAAATAGATA
GGGCGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q6I535

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

66.304

98.133

0.651