Detailed information NTG0436089

Bioinformatically predicted

Overview

• Name: comFA
• Type: Machinery gene
• Locus tag: HCM98_RS27560
• Genome accession: NZ_CP051013
• Coordinates: 5223355..5224704 (-)
• Length: 449 a.a.
• NCBI ID: WP_029440992.1
• Uniprot ID: -
• Organism: Bacillus tropicus strain LM1212-DB
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5218355..5229704

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HCM98_RS27540 (HCM98_27585)	secA	5218678..5221185 (-)	2508	WP_029440990.1	preprotein translocase subunit SecA	-
HCM98_RS27545 (HCM98_27590)	raiA	5221461..5222003 (-)	543	WP_000671191.1	ribosome-associated translation inhibitor RaiA	-
HCM98_RS27550 (HCM98_27595)	cspC	5222327..5222524 (-)	198	WP_001990088.1	cold shock protein CspC	-
HCM98_RS27555 (HCM98_27600)	-	5222651..5223355 (-)	705	WP_029440991.1	ComF family protein	-
HCM98_RS27560 (HCM98_27605)	comFA	5223355..5224704 (-)	1350	WP_029440992.1	ATP-dependent helicase ComFA	Machinery gene
HCM98_RS27565 (HCM98_27610)	-	5224832..5226220 (-)	1389	WP_029440993.1	C40 family peptidase	-
HCM98_RS27570 (HCM98_27615)	-	5226369..5226683 (-)	315	WP_029440994.1	helix-turn-helix domain-containing protein	-
HCM98_RS27575 (HCM98_27620)	-	5226857..5227699 (-)	843	WP_029440995.1	DegV family protein	-
HCM98_RS27580 (HCM98_27625)	-	5227939..5228574 (+)	636	WP_000926680.1	YigZ family protein	-

Sequence

Protein

• Length: 449 a.a.
• Molecular weight: 51123.78 Da
• Isoelectric Point: 9.5958

>NTDB_id=436089 HCM98_RS27560 WP_029440992.1 5223355..5224704(-) (comFA) [Bacillus tropicus strain LM1212-DB]
MLAGKQLLLEEISSDLRRELSDLKEKGEVICVQGVIKKASKYICQRCGNIEQRLFASFLCKRCGKACMYCRKCITMGRVS
ECTVLVRGINERKRERELNSLQWKGALATGQELAAQGVIEAIKQKESFFIWAVCGAGKTEMLFYGIEEALQKGERVCIAT
PRTDVVMELAPRLQEVFPSINVAALYGGSVDHEKDAALVVATTHQLLRYYRAFHVMIVDEIDAFPYHADQMLQYAVQQAM
KEKAARIYLTATPDEKWKRNFRMGKQKGIIVSGRYHRHPLPVPLFSWCGNWKKSLHHKKIPRVLLQWLKMNLNKKYPIFL
FVPHVRYIEDVSLLLKGLDNRIDGVHAEDPMRKEKVTSFRKGDIPLLVTTTILERGVTVKNLQVAVLGAEEEIFSESALV
QIAGRAGRSFEEPYGEVVYFHYGKTEAMVRAKKHIQSMNKSAKEQGLID

Nucleotide

• Length: 1350 bp

>NTDB_id=436089 HCM98_RS27560 WP_029440992.1 5223355..5224704(-) (comFA) [Bacillus tropicus strain LM1212-DB]
ATGCTTGCTGGAAAGCAGTTGCTATTAGAAGAAATATCTTCAGACTTAAGGAGAGAATTGAGTGATTTAAAAGAGAAGGG
AGAGGTCATATGTGTACAAGGCGTAATAAAGAAGGCTTCTAAATATATATGTCAGCGCTGCGGAAATATAGAGCAGCGGC
TATTTGCATCATTTTTATGTAAAAGATGCGGTAAAGCATGCATGTATTGCCGGAAGTGTATAACGATGGGGAGAGTTAGT
GAATGTACTGTACTTGTTCGAGGGATTAATGAAAGAAAAAGAGAAAGGGAATTAAATTCGTTACAGTGGAAAGGTGCATT
GGCTACTGGTCAGGAGTTGGCGGCGCAAGGTGTTATAGAAGCGATTAAGCAGAAAGAATCTTTTTTTATTTGGGCTGTGT
GCGGGGCTGGAAAAACAGAAATGTTATTTTACGGTATAGAAGAGGCGCTTCAAAAAGGAGAAAGAGTTTGTATCGCAACA
CCAAGGACGGACGTTGTAATGGAATTAGCTCCAAGATTACAAGAAGTGTTTCCAAGTATAAATGTAGCTGCTTTATACGG
AGGGAGTGTAGATCATGAAAAAGATGCAGCGTTAGTCGTTGCAACGACTCACCAATTGTTACGTTACTATAGAGCGTTTC
ATGTGATGATTGTAGATGAGATTGATGCCTTCCCGTATCATGCGGATCAAATGTTACAGTATGCAGTGCAACAAGCGATG
AAAGAGAAAGCAGCGCGTATTTATTTAACTGCAACCCCTGATGAAAAGTGGAAGCGCAATTTCAGAATGGGGAAACAAAA
AGGTATCATTGTTTCGGGACGATATCATCGTCATCCGTTACCAGTTCCTCTATTTAGTTGGTGCGGAAATTGGAAGAAAA
GCCTCCATCATAAAAAAATTCCTCGCGTGTTACTACAATGGTTAAAAATGAACTTAAACAAAAAGTATCCTATTTTTTTA
TTTGTTCCTCATGTGCGATATATAGAAGATGTGAGCCTGTTATTGAAAGGATTGGATAATCGAATCGATGGCGTACATGC
AGAAGATCCGATGAGAAAAGAAAAAGTGACATCCTTCAGAAAGGGAGACATTCCGTTATTAGTTACAACGACAATTTTAG
AAAGAGGAGTAACTGTGAAGAACTTACAAGTGGCTGTGTTAGGAGCTGAAGAAGAAATATTTTCGGAAAGTGCGCTCGTA
CAAATTGCAGGCCGAGCAGGTCGTAGTTTTGAAGAACCTTATGGTGAGGTTGTTTATTTTCATTACGGTAAGACAGAGGC
GATGGTACGTGCGAAAAAACATATTCAAAGTATGAACAAAAGTGCGAAAGAACAAGGATTGATCGATTAA

Domains

Predicted by InterproScan.

• Helicase conserved C-terminal domain (Helicase_C) (311-408)

• Type III restriction enzyme, res subunit (ResIII) (107-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFA	Bacillus subtilis subsp. subtilis str. 168	50.922	96.659	0.492
comFA	Latilactobacillus sakei subsp. sakei 23K	40.741	90.2	0.367