Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   HCM98_RS22845 Genome accession   NZ_CP051013
Coordinates   4365537..4366283 (-) Length   248 a.a.
NCBI ID   WP_000487010.1    Uniprot ID   Q81LT9
Organism   Bacillus tropicus strain LM1212-DB     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 4360537..4371283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HCM98_RS22830 (HCM98_22865) dnaG 4361306..4363102 (-) 1797 WP_029439944.1 DNA primase -
  HCM98_RS22835 (HCM98_22870) - 4363955..4364767 (-) 813 WP_000368943.1 pyruvate, water dikinase regulatory protein -
  HCM98_RS22840 (HCM98_22875) - 4364797..4365429 (-) 633 WP_000583759.1 helix-turn-helix transcriptional regulator -
  HCM98_RS22845 (HCM98_22880) recO 4365537..4366283 (-) 747 WP_000487010.1 DNA repair protein RecO Machinery gene
  HCM98_RS22850 (HCM98_22885) - 4366317..4366460 (-) 144 WP_000883924.1 YqzL family protein -
  HCM98_RS22855 (HCM98_22890) era 4366637..4367542 (-) 906 WP_029439945.1 GTPase Era -
  HCM98_RS22860 (HCM98_22895) - 4367535..4367933 (-) 399 WP_001086294.1 cytidine deaminase -
  HCM98_RS22865 (HCM98_22900) - 4368033..4368386 (-) 354 WP_029439946.1 diacylglycerol kinase family protein -
  HCM98_RS22870 (HCM98_22905) ybeY 4368383..4368853 (-) 471 WP_000054692.1 rRNA maturation RNase YbeY -
  HCM98_RS22875 (HCM98_22910) - 4368850..4370994 (-) 2145 WP_029439947.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 28665.22 Da        Isoelectric Point: 8.0540

>NTDB_id=436079 HCM98_RS22845 WP_000487010.1 4365537..4366283(-) (recO) [Bacillus tropicus strain LM1212-DB]
MFQKVEGIVIRTTDYGETNKIVTIFSRELGKVSAMARGAKKPKSRLASVSQLMTHGHFLIQMGSGLGTLQQGEIISTMKE
IREDIFLTAYASFIVELTDKATEDKKHNPYLFEMLYQTLHYMCEGVDPEVLSLIYQTKMLPVLGMRPYFDTCAICHQETD
FVAFSVREGGFLCSRHAEQDQYRIPVGEAVHKLLRLFYHFDLHRLGNVSVKDSTKKQMRLVLNTYYDEYCGIYLKSRRFL
EQLDKFQI

Nucleotide


Download         Length: 747 bp        

>NTDB_id=436079 HCM98_RS22845 WP_000487010.1 4365537..4366283(-) (recO) [Bacillus tropicus strain LM1212-DB]
ATGTTTCAAAAAGTTGAGGGCATCGTTATCCGTACGACAGATTACGGAGAAACGAACAAGATTGTTACAATATTCTCAAG
AGAATTGGGTAAGGTAAGTGCAATGGCAAGAGGAGCGAAAAAACCGAAAAGTCGGTTAGCATCTGTTTCGCAGCTTATGA
CACATGGTCATTTCCTTATTCAAATGGGATCTGGACTTGGAACTTTGCAACAAGGCGAGATTATTTCAACTATGAAAGAA
ATTCGCGAGGATATATTTTTAACTGCTTATGCATCATTTATTGTTGAGTTAACTGATAAAGCAACAGAAGATAAAAAACA
TAATCCATATTTATTTGAAATGTTATATCAAACGTTGCATTATATGTGTGAGGGTGTTGATCCAGAAGTATTATCATTAA
TTTACCAAACAAAAATGCTTCCGGTATTAGGGATGCGCCCGTACTTTGATACATGTGCGATTTGTCATCAAGAAACAGAT
TTTGTCGCCTTCTCTGTTAGGGAGGGCGGTTTTCTGTGCTCACGTCATGCTGAGCAAGATCAGTATCGTATACCAGTGGG
GGAAGCCGTTCATAAATTATTGCGTCTTTTCTACCACTTCGATTTACATAGACTTGGCAATGTATCAGTGAAGGATAGCA
CAAAAAAACAAATGCGTTTAGTATTGAATACATATTATGATGAATATTGCGGGATTTATTTGAAATCAAGACGTTTCTTA
GAACAACTTGATAAGTTTCAAATATAA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-238)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q81LT9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

55.466

99.597

0.552