Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   HCM98_RS22580 Genome accession   NZ_CP051013
Coordinates   4312712..4313755 (-) Length   347 a.a.
NCBI ID   WP_029439919.1    Uniprot ID   -
Organism   Bacillus tropicus strain LM1212-DB     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4307712..4318755
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HCM98_RS22535 (HCM98_22570) - 4308141..4308341 (-) 201 WP_000106081.1 YqzE family protein -
  HCM98_RS22540 (HCM98_22575) aroK 4308380..4308877 (-) 498 WP_029439912.1 shikimate kinase AroK -
  HCM98_RS22545 (HCM98_22580) - 4308996..4309646 (-) 651 WP_029439913.1 2OG-Fe(II) oxygenase -
  HCM98_RS22550 (HCM98_22585) comGG 4309822..4310193 (-) 372 WP_029439914.1 competence type IV pilus minor pilin ComGG -
  HCM98_RS22555 (HCM98_22590) comGF 4310190..4310660 (-) 471 WP_029439915.1 competence type IV pilus minor pilin ComGF -
  HCM98_RS22560 (HCM98_22595) comGE 4310630..4310932 (-) 303 WP_029439916.1 competence type IV pilus minor pilin ComGE -
  HCM98_RS22565 (HCM98_22600) comGD 4310925..4311380 (-) 456 WP_029439917.1 comG operon protein ComGD -
  HCM98_RS22570 (HCM98_22605) comGC 4311377..4311676 (-) 300 WP_002194509.1 comG operon protein ComGC -
  HCM98_RS22575 (HCM98_22610) comGB 4311688..4312719 (-) 1032 WP_029439918.1 comG operon protein ComGB -
  HCM98_RS22580 (HCM98_22615) comGA 4312712..4313755 (-) 1044 WP_029439919.1 competence protein ComGA Machinery gene
  HCM98_RS22585 (HCM98_22620) - 4313961..4314656 (+) 696 WP_029439920.1 helix-turn-helix domain-containing protein -
  HCM98_RS22590 (HCM98_22625) - 4314782..4315024 (+) 243 WP_029439921.1 DUF2626 domain-containing protein -
  HCM98_RS22595 (HCM98_22630) - 4315132..4316526 (+) 1395 WP_001094339.1 L-cystine transporter -
  HCM98_RS22600 (HCM98_22635) - 4316744..4317151 (-) 408 WP_029439922.1 hypothetical protein -
  HCM98_RS22605 (HCM98_22640) - 4317239..4317454 (-) 216 WP_001008328.1 DUF3912 family protein -
  HCM98_RS22610 (HCM98_22645) - 4317707..4318018 (+) 312 WP_029439923.1 hypothetical protein -
  HCM98_RS22615 (HCM98_22650) - 4318055..4318543 (-) 489 WP_029439924.1 hypothetical protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 39136.51 Da        Isoelectric Point: 8.9182

>NTDB_id=436078 HCM98_RS22580 WP_029439919.1 4312712..4313755(-) (comGA) [Bacillus tropicus strain LM1212-DB]
MNGIESFANTILKEACRVQASDLHIVPRQKDVVVQLRIGKDLMTKQCIEKEFGEKLVSHFKFLASMDIGERRKPQNGSLY
LQMDGQEVYLRLSTLPTVYQESLVIRLHLQASIQPLSHLSLFPSTAKKLLSFLHYSHGLLVFTGPTGSGKTTTMYALLEV
IRKKKTRRIVTLEDPVEKRSDDLLQIQINEKAGITYEAGLKAILRHDPDVILVGEIRDEETAKIAIRASLTGHLVMTTLH
TNDARGAILRFIDFGITRQEIEQSLLAIAAQRLVELKCPFCNRKCSTLCKSMRQVRQASIYELLYGYELKQAIKGANGEC
VTSKHETLESSIRKGYALGFLEEDVYV

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=436078 HCM98_RS22580 WP_029439919.1 4312712..4313755(-) (comGA) [Bacillus tropicus strain LM1212-DB]
ATGAATGGAATTGAAAGCTTTGCGAATACGATTTTGAAAGAAGCGTGCAGGGTACAAGCGTCGGACTTACATATTGTGCC
CCGACAGAAGGATGTAGTGGTTCAACTGCGTATAGGAAAAGATTTAATGACGAAACAATGCATTGAAAAGGAGTTTGGAG
AAAAACTTGTTTCACACTTTAAATTTTTAGCATCCATGGATATAGGGGAGAGGCGGAAGCCACAAAATGGTTCGCTGTAT
TTACAAATGGATGGACAGGAAGTGTATTTACGTCTTTCTACGCTTCCAACTGTATATCAAGAAAGTCTCGTTATTCGTCT
TCATCTACAAGCATCTATTCAGCCATTATCTCATCTTTCGTTATTTCCAAGTACAGCGAAGAAACTACTTTCTTTTTTAC
ATTATTCCCATGGGTTACTCGTATTTACTGGACCGACTGGTTCTGGGAAGACAACAACGATGTATGCATTATTAGAGGTA
ATTAGAAAAAAGAAAACACGCCGTATCGTTACACTGGAGGATCCAGTTGAAAAAAGAAGTGACGATTTATTACAAATTCA
AATAAATGAAAAAGCAGGTATCACATATGAGGCTGGACTAAAGGCTATTTTGCGTCATGATCCAGATGTTATTTTAGTCG
GTGAAATTCGTGATGAAGAAACAGCGAAAATTGCTATAAGAGCAAGTTTGACTGGACATTTAGTAATGACGACACTGCAT
ACAAATGATGCGAGAGGGGCGATACTCAGGTTCATAGATTTTGGCATAACGAGGCAAGAGATTGAACAATCTTTATTAGC
TATAGCTGCACAGAGACTTGTCGAATTAAAGTGTCCGTTTTGTAACAGAAAGTGCTCAACTTTATGTAAATCAATGAGGC
AAGTAAGACAAGCGAGTATTTATGAGTTGTTATATGGATATGAATTAAAACAAGCGATTAAAGGAGCAAACGGGGAATGT
GTCACATCCAAGCATGAAACGTTAGAATCTTCGATAAGAAAAGGATACGCTTTAGGATTTTTAGAAGAGGATGTTTATGT
TTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

57.061

100

0.571