Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   HCM98_RS22215 Genome accession   NZ_CP051013
Coordinates   4258287..4259081 (-) Length   264 a.a.
NCBI ID   WP_033686380.1    Uniprot ID   A0A4Y6EYG5
Organism   Bacillus tropicus strain LM1212-DB     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 4253287..4264081
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HCM98_RS22195 (HCM98_22230) - 4255089..4255322 (+) 234 WP_001190188.1 DUF2627 domain-containing protein -
  HCM98_RS22200 (HCM98_22235) - 4255372..4256100 (-) 729 WP_098313513.1 glycerophosphodiester phosphodiesterase -
  HCM98_RS22205 (HCM98_22240) - 4256152..4256298 (+) 147 WP_001247671.1 YycC family protein -
  HCM98_RS22210 (HCM98_22245) - 4256465..4257991 (-) 1527 WP_029439881.1 glycosyltransferase family 39 protein -
  HCM98_RS22215 (HCM98_22250) spo0A 4258287..4259081 (-) 795 WP_033686380.1 sporulation transcription factor Spo0A Regulator
  HCM98_RS22220 (HCM98_22255) spoIVB 4259369..4260667 (-) 1299 WP_029439882.1 SpoIVB peptidase -
  HCM98_RS22225 (HCM98_22260) recN 4260786..4262525 (-) 1740 WP_029439883.1 DNA repair protein RecN Machinery gene
  HCM98_RS22230 (HCM98_22265) argR 4262793..4263242 (-) 450 WP_001032581.1 arginine repressor ArgR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29454.20 Da        Isoelectric Point: 7.4718

>NTDB_id=436076 HCM98_RS22215 WP_033686380.1 4258287..4259081(-) (spo0A) [Bacillus tropicus strain LM1212-DB]
MEKIKVCLVDDNKELVSMLESYVAAQDDMEVIGTAYNGQECLNLLKDKQPDVLVLDIIMPHLDGLAVLEKMRHIERLRQP
SVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLTSHIRQVSGKANATIKRPLPSFRSATTIDGKPKNLDASITSIIHE
IGVPAHIKGYMYLREAISMVYNDIELLGSITKVLYPDIAKKYNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVSMS
KAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 795 bp        

>NTDB_id=436076 HCM98_RS22215 WP_033686380.1 4258287..4259081(-) (spo0A) [Bacillus tropicus strain LM1212-DB]
GTGGAGAAAATTAAAGTATGTCTTGTGGATGATAATAAAGAATTAGTATCAATGTTAGAGAGTTATGTAGCTGCTCAAGA
TGATATGGAAGTAATCGGTACTGCTTATAATGGTCAAGAGTGTTTAAATTTATTAAAAGATAAGCAGCCGGATGTACTTG
TTTTAGATATTATTATGCCACATTTAGATGGTTTAGCTGTACTAGAGAAAATGCGACATATTGAAAGGTTAAGACAGCCT
AGCGTAATTATGTTGACAGCATTTGGTCAAGAAGATGTGACGAAAAAAGCGGTTGACTTAGGTGCTTCCTATTTCATATT
AAAACCATTTGATATGGAGAATTTAACGAGTCATATTCGTCAAGTGAGCGGTAAAGCGAACGCTACCATTAAACGTCCAC
TTCCATCTTTCCGTTCAGCAACGACAATAGATGGCAAGCCGAAAAACTTAGATGCGAGCATTACGAGTATCATCCATGAA
ATTGGTGTGCCTGCTCATATTAAAGGGTATATGTACTTAAGGGAAGCGATCTCTATGGTGTACAACGATATCGAATTACT
TGGATCTATTACGAAAGTATTGTATCCAGATATCGCGAAGAAATATAATACAACAGCAAGCCGTGTTGAGCGTGCAATCC
GTCACGCGATTGAAGTAGCATGGAGTCGTGGGAATATTGATTCTATTTCGTCCTTATTCGGTTATACAGTATCCATGTCA
AAAGCAAAACCTACGAATTCCGAGTTCATCGCAATGGTTGCGGATAAGCTGAGACTTGAACATAAGGCTAGCTGA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(154-257)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Y6EYG5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

80.899

100

0.818