Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   HCM98_RS21325 Genome accession   NZ_CP051013
Coordinates   4095363..4095821 (+) Length   152 a.a.
NCBI ID   WP_000804871.1    Uniprot ID   A0A516QVQ1
Organism   Bacillus tropicus strain LM1212-DB     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 4090363..4100821
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HCM98_RS21310 (HCM98_21340) - 4091023..4091259 (+) 237 WP_029438065.1 hypothetical protein -
  HCM98_RS21315 (HCM98_21345) - 4091433..4093541 (-) 2109 WP_000423559.1 polyphosphate kinase -
  HCM98_RS21320 (HCM98_21350) - 4093650..4095185 (-) 1536 WP_029438066.1 Ppx/GppA family phosphatase -
  HCM98_RS21325 (HCM98_21355) kre 4095363..4095821 (+) 459 WP_000804871.1 YkyB family protein Regulator
  HCM98_RS21330 (HCM98_21360) - 4095853..4096515 (-) 663 WP_000922488.1 YkyA family protein -
  HCM98_RS21335 (HCM98_21365) - 4097170..4097811 (-) 642 WP_098224674.1 diguanylate cyclase -
  HCM98_RS21340 (HCM98_21370) - 4097976..4098209 (+) 234 WP_061685639.1 SPP1 phage holin family protein -
  HCM98_RS21345 (HCM98_21375) - 4098241..4098741 (-) 501 WP_029438068.1 hypothetical protein -
  HCM98_RS21350 (HCM98_21380) - 4099169..4100710 (+) 1542 WP_000445746.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17773.49 Da        Isoelectric Point: 10.6793

>NTDB_id=436074 HCM98_RS21325 WP_000804871.1 4095363..4095821(+) (kre) [Bacillus tropicus strain LM1212-DB]
MKPSQPQSQLQNQHSINRLAQSVFVVNRHAKAATNPKYLYWLKKTALERLITEKKAIKEGLHFSRNPRFSQQQSDVLIRL
GDYFFHIPPTKEDFRILPHLGHLESSYRNPKTTLSLTVAKKTLQDYIGPEALKQEKKLSEPVPWYSRTYTKK

Nucleotide


Download         Length: 459 bp        

>NTDB_id=436074 HCM98_RS21325 WP_000804871.1 4095363..4095821(+) (kre) [Bacillus tropicus strain LM1212-DB]
ATGAAACCTTCACAACCACAATCTCAATTACAAAACCAACATTCTATTAATCGACTAGCTCAATCTGTTTTCGTTGTGAA
TCGTCATGCTAAAGCTGCAACTAATCCGAAATATTTATACTGGTTAAAAAAGACAGCTTTAGAACGCTTAATTACTGAAA
AAAAAGCTATTAAAGAAGGATTACATTTCTCTAGAAATCCACGTTTTAGCCAACAACAATCTGATGTTCTTATACGTTTA
GGTGATTACTTTTTCCATATTCCTCCTACAAAAGAAGATTTTCGAATCCTACCACATCTCGGTCATCTTGAATCCTCCTA
TCGAAACCCGAAAACAACCTTATCTTTAACAGTAGCAAAAAAAACACTTCAAGATTATATTGGTCCTGAAGCGCTAAAAC
AAGAAAAAAAATTAAGTGAACCTGTCCCATGGTATAGTCGTACTTATACAAAAAAATAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(16-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A516QVQ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

65.517

76.316

0.5