Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   HCM98_RS17255 Genome accession   NZ_CP051013
Coordinates   3314280..3314567 (-) Length   95 a.a.
NCBI ID   WP_029439400.1    Uniprot ID   -
Organism   Bacillus tropicus strain LM1212-DB     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3309280..3319567
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HCM98_RS17235 (HCM98_17260) - 3309890..3310825 (-) 936 WP_029439403.1 aldo/keto reductase -
  HCM98_RS17240 (HCM98_17265) - 3310933..3311241 (+) 309 WP_001259892.1 helix-turn-helix transcriptional regulator -
  HCM98_RS17245 (HCM98_17270) galT 3311354..3312844 (-) 1491 WP_029439402.1 UDP-glucose--hexose-1-phosphate uridylyltransferase -
  HCM98_RS17250 (HCM98_17275) - 3313056..3314006 (-) 951 WP_029439401.1 serine protease -
  HCM98_RS17255 (HCM98_17280) abrB 3314280..3314567 (-) 288 WP_029439400.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  HCM98_RS17260 (HCM98_17285) - 3314683..3316563 (-) 1881 WP_029439399.1 ABC transporter permease -
  HCM98_RS17265 (HCM98_17290) nadE 3316835..3317653 (+) 819 WP_029439398.1 ammonia-dependent NAD(+) synthetase -
  HCM98_RS17270 (HCM98_17295) - 3317699..3318160 (-) 462 WP_000024988.1 NUDIX hydrolase -
  HCM98_RS17275 (HCM98_17300) - 3318191..3318388 (-) 198 WP_029439397.1 DUF4083 domain-containing protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10631.41 Da        Isoelectric Point: 7.9574

>NTDB_id=436070 HCM98_RS17255 WP_029439400.1 3314280..3314567(-) (abrB) [Bacillus tropicus strain LM1212-DB]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEEDKVILQKYQPYNACQITGDVSNQNISLANGNITVSIDGAK
YLIKEIEKFLKKSEA

Nucleotide


Download         Length: 288 bp        

>NTDB_id=436070 HCM98_RS17255 WP_029439400.1 3314280..3314567(-) (abrB) [Bacillus tropicus strain LM1212-DB]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTTATTCCTAAAGAATTACGTGATGTATTGGG
AATACAAATCAAATCACCACTTGAAATTTTCGTAGAAGAAGATAAAGTCATTTTACAAAAATATCAACCTTACAATGCTT
GTCAAATAACAGGTGATGTTTCAAATCAAAACATATCATTAGCAAATGGAAACATTACTGTTAGTATAGATGGAGCGAAA
TATTTAATAAAAGAAATAGAGAAGTTTTTAAAGAAGAGTGAGGCTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

53.846

95.789

0.516