Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   HCM98_RS08270 Genome accession   NZ_CP051013
Coordinates   1571990..1572592 (-) Length   200 a.a.
NCBI ID   WP_000155593.1    Uniprot ID   A0A2A7DG84
Organism   Bacillus tropicus strain LM1212-DB     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1566990..1577592
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HCM98_RS08250 (HCM98_08265) dnaD 1567300..1568007 (+) 708 WP_000728540.1 DNA replication protein DnaD -
  HCM98_RS08255 (HCM98_08270) nth 1568023..1568670 (+) 648 WP_000933027.1 endonuclease III -
  HCM98_RS08260 (HCM98_08275) - 1568674..1569192 (+) 519 WP_029440703.1 YpoC family protein -
  HCM98_RS08265 (HCM98_08280) - 1569216..1571924 (-) 2709 WP_029440704.1 PBP1A family penicillin-binding protein -
  HCM98_RS08270 (HCM98_08285) recU 1571990..1572592 (-) 603 WP_000155593.1 Holliday junction resolvase RecU Machinery gene
  HCM98_RS08275 (HCM98_08290) - 1572696..1573721 (+) 1026 WP_029440705.1 DUF2515 domain-containing protein -
  HCM98_RS08280 - 1573871..1574047 (-) 177 WP_080449819.1 phage portal protein -
  HCM98_RS08285 (HCM98_08295) - 1574133..1574375 (+) 243 WP_001252039.1 hypothetical protein -
  HCM98_RS08290 (HCM98_08300) - 1574391..1574735 (+) 345 WP_029440706.1 YppE family protein -
  HCM98_RS08295 (HCM98_08305) - 1574760..1574951 (-) 192 WP_000242660.1 YppF family protein -
  HCM98_RS08300 (HCM98_08310) - 1575129..1575629 (+) 501 WP_000487702.1 YppG family protein -
  HCM98_RS08305 (HCM98_08315) - 1575785..1576186 (+) 402 WP_029440707.1 CotD family spore coat protein -
  HCM98_RS08310 (HCM98_08320) - 1576243..1576797 (+) 555 WP_000862921.1 DUF1273 domain-containing protein -
  HCM98_RS08315 (HCM98_08325) gpsB 1576895..1577233 (+) 339 WP_029440708.1 cell division regulator GpsB -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23312.63 Da        Isoelectric Point: 9.5601

>NTDB_id=436064 HCM98_RS08270 WP_000155593.1 1571990..1572592(-) (recU) [Bacillus tropicus strain LM1212-DB]
MTIRYPNGKRYNQASQPHKTPIKKHTYSNRGMSLEEELNETNEYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVIAHNGIAFVIIKFTLFDELYLLDAKHIIAFWNRQ
NTGGRKSITKEEIVEHGSLLSCGYHPRIDYIRVLDTVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=436064 HCM98_RS08270 WP_000155593.1 1571990..1572592(-) (recU) [Bacillus tropicus strain LM1212-DB]
ATGACCATTCGTTACCCAAATGGAAAACGGTACAATCAAGCTTCACAACCTCATAAAACACCAATTAAAAAACATACTTA
TAGTAACAGAGGTATGTCCCTTGAAGAGGAATTGAATGAAACAAATGAATATTACTTAACCCATAATATTGCATGTGTAC
ATAAAAAACCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTT
AAACAACCTTCTACAACAGATTACAACGGTGTATATAAAGGGAAATACATCGATTTTGAAGCGAAAGAAACAAAAAATAA
AACCAGCTTTCCACTTCAAAACTTCCACCTGCATCAAATTGAACATATGAAGCAAGTAATCGCTCATAATGGAATTGCAT
TTGTTATTATTAAATTTACACTTTTTGATGAACTTTATTTATTAGATGCAAAACATATTATTGCATTTTGGAATCGTCAA
AATACTGGTGGACGAAAATCGATTACGAAAGAAGAAATAGTAGAGCACGGGTCTTTATTATCATGCGGTTATCACCCTCG
GATTGATTATATCCGTGTACTAGACACGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A7DG84

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

62.5

100

0.625