Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   IIE08_RS10835 Genome accession   NZ_CP062985
Coordinates   2222610..2224037 (+) Length   475 a.a.
NCBI ID   WP_000980617.1    Uniprot ID   -
Organism   Escherichia coli UTI89     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2217610..2229037
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IIE08_RS10795 yeeW 2217795..2217989 (+) 195 WP_000988601.1 DUF5983 family protein -
  IIE08_RS10800 - 2218035..2218115 (+) 81 Protein_2143 hypothetical protein -
  IIE08_RS24835 - 2218404..2218577 (-) 174 WP_032082634.1 transposase domain-containing protein -
  IIE08_RS24840 - 2218604..2218786 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  IIE08_RS10815 tmaR 2218887..2219216 (-) 330 WP_000450409.1 DUF496 family protein -
  IIE08_RS10820 yeeA 2219388..2220446 (-) 1059 WP_001200890.1 FUSC family protein -
  IIE08_RS10825 sbmC 2220644..2221117 (-) 474 WP_001105376.1 DNA gyrase inhibitor SbmC -
  IIE08_RS10830 dacD 2221236..2222401 (-) 1166 Protein_2149 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  IIE08_RS10835 sbcB 2222610..2224037 (+) 1428 WP_000980617.1 exodeoxyribonuclease I Machinery gene
  IIE08_RS10840 plaP 2224111..2225469 (-) 1359 WP_000019194.1 putrescine/proton symporter PlaP -
  IIE08_RS10845 yoeI 2225459..2225521 (-) 63 WP_010723108.1 membrane protein YoeI -
  IIE08_RS10850 yeeY 2225736..2226665 (-) 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
  IIE08_RS10855 yeeZ 2226711..2227535 (-) 825 WP_000754733.1 SDR family oxidoreductase -
  IIE08_RS10860 yoeB 2227618..2227872 (-) 255 WP_000767822.1 type II toxin-antitoxin system mRNA interferase toxin YoeB -
  IIE08_RS10865 yefM 2227869..2228120 (-) 252 WP_001259255.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -
  IIE08_RS10870 hisL 2228403..2228453 (+) 51 WP_001364200.1 his operon leader peptide -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54541.87 Da        Isoelectric Point: 5.6114

>NTDB_id=436044 IIE08_RS10835 WP_000980617.1 2222610..2224037(+) (sbcB) [Escherichia coli UTI89]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSRMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSENVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=436044 IIE08_RS10835 WP_000980617.1 2222610..2224037(+) (sbcB) [Escherichia coli UTI89]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCTCGGGCGAAAGGAGAAAAC
GAAGCCGCATTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCAGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGAGAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTGA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581