Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   IL989_RS16955 Genome accession   NZ_CP062984
Coordinates   3432221..3433351 (-) Length   376 a.a.
NCBI ID   WP_014471144.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain PP19 isolate PP19     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3427221..3438351
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IL989_RS16920 (IL989_16920) - 3427359..3428000 (-) 642 WP_193350954.1 NAD(P)-dependent oxidoreductase -
  IL989_RS16925 (IL989_16925) - 3428065..3428469 (-) 405 WP_003151203.1 Rrf2 family transcriptional regulator -
  IL989_RS16930 (IL989_16930) ureC 3428611..3430320 (-) 1710 WP_193350955.1 urease subunit alpha -
  IL989_RS16935 (IL989_16935) ureB 3430317..3430691 (-) 375 WP_193350956.1 urease subunit beta -
  IL989_RS16940 (IL989_16940) ureA 3430688..3431005 (-) 318 WP_193350957.1 urease subunit gamma -
  IL989_RS16945 (IL989_16945) - 3431357..3431545 (-) 189 WP_014472339.1 CsbD family protein -
  IL989_RS16950 (IL989_16950) - 3431619..3432098 (-) 480 WP_014471143.1 hypothetical protein -
  IL989_RS16955 (IL989_16955) rapC 3432221..3433351 (-) 1131 WP_014471144.1 tetratricopeptide repeat protein Regulator
  IL989_RS16960 (IL989_16960) moaA 3433537..3434562 (-) 1026 WP_193350958.1 GTP 3',8-cyclase MoaA -
  IL989_RS16965 (IL989_16965) fdhD 3434580..3435368 (-) 789 WP_013353899.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  IL989_RS16970 (IL989_16970) - 3435463..3435627 (-) 165 WP_190277775.1 hypothetical protein -
  IL989_RS16975 (IL989_16975) - 3435713..3436393 (-) 681 WP_014471147.1 VWA domain-containing protein -
  IL989_RS16980 (IL989_16980) - 3436703..3437392 (-) 690 WP_193350959.1 VWA domain-containing protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44906.03 Da        Isoelectric Point: 5.4460

>NTDB_id=436005 IL989_RS16955 WP_014471144.1 3432221..3433351(-) (rapC) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
MTAYEIPSSQVGVKINKWYKHILAFQAADAIKLKEEIDEDIQRMEEDQLLLLYYQLISYRHHIMLDYVKPDFTEQSQIQY
SELQKTIESTDSISGLSEYYFHLFRGMYEFDQNNYVAAISFYRKAEKLLSFVEDDIERAEFHFKMSEVFYVMKQTHFSMN
HGIQALDTYVKHDFYRVRRIQCHFVISGNYIDCKNYDKALEHLDEALRLSLLEGQPRLIGSSLYNLGNCYSEKRDLDEAA
RYFRKAVPVFEEHQLEQLPKALFSLTHTLFRLHDDEAALAYYERGVMIAKERGDRFSLEKYKFLQALYLESLNMDLIHEV
FDYMNKKSLYVYIEDFALEAAIYTSAHKQYKEAAYFYEQAIRMRENIQKEQCLYDI

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=436005 IL989_RS16955 WP_014471144.1 3432221..3433351(-) (rapC) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
ATGACCGCATACGAGATTCCGTCATCTCAAGTTGGAGTCAAGATCAACAAATGGTACAAGCACATTTTAGCGTTTCAAGC
GGCTGATGCCATAAAGCTGAAAGAGGAAATTGATGAGGATATACAACGGATGGAGGAAGACCAGCTGCTGCTGCTGTATT
ATCAGCTGATCAGCTACCGCCATCATATTATGCTTGATTACGTCAAGCCGGATTTCACCGAACAATCACAAATTCAGTAC
AGCGAGCTGCAAAAGACGATCGAAAGCACGGACAGCATATCGGGACTGTCTGAGTATTATTTCCATTTGTTCAGAGGGAT
GTATGAATTCGATCAGAATAACTATGTTGCAGCTATTTCTTTTTACCGGAAAGCGGAAAAACTCCTTTCATTTGTCGAGG
ATGATATAGAGAGGGCGGAATTCCATTTTAAGATGTCTGAAGTGTTTTATGTCATGAAACAGACTCATTTTTCCATGAAT
CACGGGATTCAGGCGCTGGATACATATGTAAAACACGATTTTTACAGGGTGCGGAGAATTCAATGCCATTTCGTTATCTC
GGGAAACTATATCGACTGCAAAAACTACGACAAAGCGCTCGAGCATTTAGATGAAGCGCTCCGTCTTTCTTTGCTTGAAG
GACAGCCCCGCCTGATCGGGTCTTCGCTTTACAATCTGGGAAATTGTTATTCTGAAAAGCGCGATCTGGATGAAGCGGCC
CGTTACTTTAGAAAAGCGGTTCCCGTTTTTGAGGAGCACCAGCTTGAACAGCTTCCGAAGGCGCTGTTCAGCTTAACACA
CACCCTTTTCAGGCTGCATGATGACGAAGCGGCCCTTGCCTATTATGAAAGAGGGGTTATGATCGCGAAAGAACGCGGCG
ACCGATTCAGTTTAGAGAAATATAAGTTTTTACAAGCGCTTTATCTGGAATCCCTCAATATGGACTTAATCCACGAAGTG
TTTGACTATATGAATAAAAAATCGCTGTATGTGTATATTGAAGATTTCGCCTTGGAGGCCGCCATTTACACAAGCGCCCA
TAAGCAATATAAAGAAGCGGCGTATTTTTATGAACAAGCGATCCGCATGAGAGAAAACATTCAAAAAGAACAATGTTTAT
ACGATATATAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)

Tetratricopeptide repeat (TPR_12)

(192-251)

Anaphase-promoting complex subunit 5 (ANAPC5)

(314-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

42.632

100

0.431
  rapF Bacillus subtilis subsp. subtilis str. 168

40.267

99.734

0.402