Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   HEQ83_RS07235 Genome accession   NZ_CP051011
Coordinates   1390096..1390380 (+) Length   94 a.a.
NCBI ID   WP_003154557.1    Uniprot ID   -
Organism   Bacillus velezensis strain BY6     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1385096..1395380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HEQ83_RS07215 - 1386343..1387251 (+) 909 WP_069473388.1 ketopantoate reductase family protein -
  HEQ83_RS07220 - 1387281..1388513 (-) 1233 WP_025851469.1 aminopeptidase -
  HEQ83_RS07225 - 1388614..1388748 (-) 135 WP_003154559.1 protein YkpC -
  HEQ83_RS07230 mreBH 1388820..1389827 (-) 1008 WP_003154558.1 cell shape-determining protein MreBH -
  HEQ83_RS07235 abrB 1390096..1390380 (+) 285 WP_003154557.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  HEQ83_RS07240 - 1390553..1391857 (+) 1305 WP_014304932.1 ATP-binding protein -
  HEQ83_RS07245 - 1391859..1392686 (+) 828 WP_069473389.1 gamma-glutamylcyclotransferase -
  HEQ83_RS07250 ktrC 1392727..1393392 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  HEQ83_RS07255 ade 1393541..1395274 (+) 1734 WP_052585832.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10584.45 Da        Isoelectric Point: 5.2271

>NTDB_id=436001 HEQ83_RS07235 WP_003154557.1 1390096..1390380(+) (abrB) [Bacillus velezensis strain BY6]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITPENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=436001 HEQ83_RS07235 WP_003154557.1 1390096..1390380(+) (abrB) [Bacillus velezensis strain BY6]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGCGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTAAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACCGGGGAAATTACCCCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAAGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543