Detailed information    

insolico Bioinformatically predicted

Overview

Name   helD   Type   Machinery gene
Locus tag   IL989_RS15335 Genome accession   NZ_CP062984
Coordinates   3112161..3114479 (-) Length   772 a.a.
NCBI ID   WP_193350782.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain PP19 isolate PP19     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3107161..3119479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IL989_RS15325 (IL989_15325) cysI 3108435..3110150 (-) 1716 WP_088613449.1 assimilatory sulfite reductase (NADPH) hemoprotein subunit -
  IL989_RS15330 (IL989_15330) - 3110178..3111986 (-) 1809 WP_193350781.1 assimilatory sulfite reductase (NADPH) flavoprotein subunit -
  IL989_RS15335 (IL989_15335) helD 3112161..3114479 (-) 2319 WP_193350782.1 RNA polymerase recycling motor HelD Machinery gene
  IL989_RS15340 (IL989_15340) - 3114648..3115256 (-) 609 WP_014472264.1 trimeric intracellular cation channel family protein -
  IL989_RS15345 (IL989_15345) - 3115479..3116279 (+) 801 WP_193350783.1 zinc-dependent metalloprotease -
  IL989_RS15350 (IL989_15350) - 3116313..3116732 (-) 420 WP_014471015.1 disulfide oxidoreductase -
  IL989_RS15355 (IL989_15355) - 3116722..3117393 (-) 672 WP_193350784.1 DsbA family protein -

Sequence

Protein


Download         Length: 772 a.a.        Molecular weight: 88496.56 Da        Isoelectric Point: 5.9367

>NTDB_id=435993 IL989_RS15335 WP_193350782.1 3112161..3114479(-) (helD) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
MAKRDEEWKEEQGRINFVMKELDQKETRLEASSGGLKQDIVGLRKTFWDDVTVNLDDAHEAAETFSSIKQQAEMLSERER
THRLQYRQLQKIQKLKASPYFGRVDFTEKGESSSERIYIGLTSLMDENNEQFLIYDWRAPISSLYYQYSPGKARYEVPDE
IIEGDITLKRQFIIKNGTLKAMFNTDMTIGDEMLQEVLSEHSGRHMKNIVSTIQKEQNEIIRDEKSKFLIVQGAAGSGKT
SAALQRAAYLLYRGRGVLDARQIVLFSPNILFNSYVSAVLPELGEENMEQATFQEYIARRLGRKFDCESPYEQLEYCLTE
QNQDALSVRLTAIAYKASSAFRTMIDRYAGSLSVSGLMCKQISFRGEILISKERIEDYFYSLDQQLPIPNRAELTAEWLL
GEISALEKKERKKEWVLQESELLDKEDYAQVYQKLKKQAEDDEPAFDDHQREQRLLGAIIVGKAFKPIKQAVRQLGFLDI
KRMYLRLFSDWESYEKPDHWQSIGALTQKAFAEQSLPYEDAAPYLYLQDLIEGKRKNTQMKHVFIDEAQDYSPFQLTYIQ
SVFPAAKMTVLGDISQSIYAHTITGPSSLAGCFRNGAEKYVSLKRTYRSTRQIVEFTKALLDDGDDIEPFNRNGEKPRLL
RADTEKARQEQLTETIRELRQKGWETIAVICKAAAEAKKVFQAVSGVTSDVRLINKENQPFQKGVCVIPVYLAKGIEFDA
VIVADASVTQYKSQHDRKLLYTACTRAMHHLTVLSPGETSPFINEVPAGLFV

Nucleotide


Download         Length: 2319 bp        

>NTDB_id=435993 IL989_RS15335 WP_193350782.1 3112161..3114479(-) (helD) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
ATGGCAAAACGTGATGAAGAATGGAAAGAAGAGCAGGGACGAATCAATTTTGTAATGAAAGAACTGGATCAGAAAGAAAC
GCGTCTTGAAGCATCATCGGGCGGATTGAAGCAGGATATTGTCGGCCTGCGAAAAACGTTCTGGGATGATGTCACCGTGA
ATTTGGATGACGCCCATGAAGCGGCGGAAACATTTTCAAGCATCAAACAGCAGGCGGAAATGCTTTCAGAGCGTGAACGG
ACGCATCGGCTTCAATATCGGCAGCTTCAAAAAATCCAAAAGCTGAAAGCCTCTCCTTACTTCGGCCGTGTCGATTTTAC
GGAAAAAGGGGAATCTTCTTCCGAGCGGATTTATATCGGGCTGACTTCTTTGATGGACGAAAACAATGAGCAATTTCTCA
TTTACGATTGGCGGGCGCCCATCTCATCTCTTTACTATCAATATTCCCCGGGAAAAGCCCGCTACGAAGTTCCGGATGAA
ATCATAGAAGGCGACATCACACTGAAGCGGCAGTTTATCATTAAAAACGGGACGCTTAAAGCGATGTTCAACACGGATAT
GACGATTGGTGACGAAATGCTGCAAGAGGTGCTGAGCGAACATTCCGGCCGGCATATGAAAAATATCGTGTCAACCATAC
AAAAAGAACAGAATGAAATCATCCGGGATGAAAAAAGCAAATTTCTCATCGTTCAGGGAGCCGCCGGAAGCGGGAAAACA
TCCGCGGCGCTTCAGCGGGCCGCTTATTTGCTGTACCGAGGGCGCGGTGTGCTTGATGCCCGTCAGATTGTGCTGTTTTC
TCCGAACATTTTGTTCAACAGTTACGTTTCCGCCGTATTGCCGGAACTGGGAGAAGAGAATATGGAGCAGGCCACCTTTC
AGGAATATATCGCCCGCCGGCTCGGACGAAAGTTTGATTGTGAAAGCCCGTACGAGCAGCTCGAATATTGCCTGACTGAG
CAAAATCAGGATGCGCTTTCCGTAAGGCTCACAGCCATCGCCTACAAAGCGTCATCAGCTTTCCGGACCATGATTGACCG
TTACGCCGGATCGCTTTCCGTCTCCGGCCTGATGTGTAAACAGATCAGCTTCCGGGGAGAAATACTGATTTCAAAAGAGC
GGATTGAAGATTACTTTTACTCACTTGATCAGCAGCTGCCGATTCCGAACAGAGCGGAGCTTACGGCGGAATGGCTTCTC
GGAGAAATCAGCGCACTCGAAAAAAAGGAACGTAAGAAGGAATGGGTTTTGCAGGAGAGTGAGCTGCTCGATAAGGAAGA
CTATGCTCAGGTTTATCAAAAACTCAAGAAGCAAGCGGAGGATGATGAACCTGCTTTTGACGACCATCAGCGCGAACAGC
GGCTGCTTGGCGCCATCATTGTGGGAAAAGCTTTTAAGCCGATTAAGCAGGCCGTCAGACAGCTTGGCTTTCTCGATATA
AAACGGATGTATCTCCGGCTGTTTTCAGACTGGGAATCATATGAAAAGCCTGATCATTGGCAGAGCATCGGCGCTCTGAC
CCAAAAAGCGTTCGCAGAGCAGTCACTCCCTTATGAAGATGCAGCTCCGTATCTTTATTTGCAGGATCTAATAGAAGGAA
AAAGAAAAAACACACAAATGAAGCACGTATTCATTGATGAAGCGCAGGATTATTCCCCATTTCAGCTGACGTATATTCAA
AGCGTCTTCCCGGCCGCGAAGATGACGGTGCTCGGTGATATCAGCCAGTCGATTTATGCCCACACCATCACAGGCCCTTC
TTCACTTGCCGGCTGTTTTCGCAACGGCGCAGAAAAGTATGTCAGCCTGAAGCGGACTTACAGATCGACGCGGCAGATTG
TTGAATTTACAAAAGCGCTGCTCGATGACGGTGATGACATTGAGCCTTTTAACCGGAACGGGGAAAAACCGCGTCTCCTG
CGGGCGGATACAGAAAAAGCGCGGCAGGAGCAATTGACGGAAACAATACGGGAGCTCAGGCAAAAAGGCTGGGAGACGAT
CGCCGTCATCTGCAAAGCTGCCGCGGAAGCAAAAAAAGTATTTCAGGCGGTCAGCGGCGTCACAAGCGATGTCCGTTTGA
TCAATAAAGAAAATCAGCCTTTCCAAAAAGGGGTATGCGTCATTCCCGTGTATTTGGCAAAAGGCATTGAGTTTGACGCC
GTCATTGTCGCTGACGCCTCTGTTACTCAATACAAAAGCCAGCATGACCGCAAGCTGTTATATACGGCCTGCACGCGGGC
GATGCATCATCTGACCGTGCTGTCTCCCGGAGAAACTTCTCCTTTTATAAACGAAGTGCCCGCCGGCTTATTCGTGTAA

Domains

Predicted by InterProScan.

AAA domain (AAA_19)

(217-580)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(705-753)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  helD Bacillus subtilis subsp. subtilis str. 168

66.148

99.87

0.661