Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   IL989_RS14165 Genome accession   NZ_CP062984
Coordinates   2879870..2881000 (-) Length   376 a.a.
NCBI ID   WP_193350660.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain PP19 isolate PP19     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2874870..2886000
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IL989_RS14140 (IL989_14140) - 2875099..2875767 (+) 669 WP_045509637.1 TrkA family potassium uptake protein -
  IL989_RS14145 (IL989_14145) - 2875793..2876638 (-) 846 WP_065522103.1 glucosaminidase domain-containing protein -
  IL989_RS14150 (IL989_14150) hmpA 2876778..2877953 (-) 1176 WP_193350657.1 NO-inducible flavohemoprotein -
  IL989_RS14155 (IL989_14155) - 2878170..2878811 (+) 642 WP_193350658.1 cupin domain-containing protein -
  IL989_RS14160 (IL989_14160) - 2878872..2879192 (-) 321 WP_193350659.1 hypothetical protein -
  IL989_RS19265 - 2879752..2879880 (-) 129 WP_264372503.1 hypothetical protein -
  IL989_RS14165 (IL989_14165) rapC 2879870..2881000 (-) 1131 WP_193350660.1 Rap family tetratricopeptide repeat protein Regulator
  IL989_RS14170 (IL989_14170) - 2881388..2881591 (+) 204 WP_193350661.1 hypothetical protein -
  IL989_RS14180 (IL989_14180) - 2882015..2882845 (-) 831 WP_038463014.1 undecaprenyl-diphosphate phosphatase -
  IL989_RS14185 (IL989_14185) - 2882937..2884097 (-) 1161 WP_013353344.1 AI-2E family transporter -
  IL989_RS14190 (IL989_14190) - 2884276..2885262 (+) 987 WP_193350662.1 Gfo/Idh/MocA family protein -
  IL989_RS14195 (IL989_14195) - 2885294..2885818 (-) 525 WP_013353346.1 type 1 glutamine amidotransferase domain-containing protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44401.85 Da        Isoelectric Point: 6.5099

>NTDB_id=435984 IL989_RS14165 WP_193350660.1 2879870..2881000(-) (rapC) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
MSPVLPSSEVGVKINEWYKMIRQFSVPDAEILKAEVEQEINEMEEDEYLLIYYTLMKFRHQLMLDYLEPVSTRVRPTIDE
LLEKIEASNKGISGLLCYYSLFFRGMYEFDQKQYVKAIGFYREAEKQLIHVHDEIERAEFHFKLAEAYYGMKQNHVSMHH
VKQALDIYDQYELYKVRKIQCLFVISGNYVDFKRYEKSLPHLEKALELSKQVNNNERLLSSAYYNIGKNYGDLEEYSKAE
IYLKKAAEISEKYKLGNLPHSLFTYAKLLFKQGKTSEAIQISKKGLSSAIYQGDKLFESLQKYLEALYINAIDQMGIKKT
IDYLEKNKNYSYVEDIALDTAAVYAESKQYDKSYIYHQKMIQTQKQIQRGECLYEF

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=435984 IL989_RS14165 WP_193350660.1 2879870..2881000(-) (rapC) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
GTGAGTCCTGTTTTACCATCATCGGAGGTTGGCGTTAAGATTAATGAATGGTACAAAATGATACGTCAGTTCAGTGTTCC
GGATGCGGAGATTTTGAAAGCGGAAGTGGAACAAGAGATAAATGAGATGGAAGAAGACGAGTATTTGCTGATTTACTACA
CTCTCATGAAATTCCGCCATCAGCTCATGCTGGATTATTTAGAACCGGTATCTACCCGCGTGAGACCGACAATTGATGAG
CTGCTGGAAAAAATCGAAGCCTCAAACAAAGGAATATCCGGCCTGCTGTGCTATTATTCTTTATTTTTCCGCGGCATGTA
TGAATTTGATCAAAAGCAGTATGTAAAGGCGATCGGCTTTTATAGAGAGGCTGAAAAACAACTCATTCATGTGCATGATG
AAATTGAGAGAGCGGAGTTTCATTTTAAACTGGCTGAAGCATATTATGGTATGAAACAAAACCATGTATCCATGCATCAC
GTTAAGCAAGCGCTAGATATTTATGATCAGTATGAATTATATAAGGTCCGGAAAATTCAATGTCTATTCGTCATATCTGG
GAATTATGTTGACTTTAAACGTTATGAAAAAAGTTTGCCGCATTTAGAAAAAGCTTTAGAGCTGTCGAAGCAAGTAAACA
ATAACGAAAGGCTGCTCAGTTCTGCTTATTACAACATAGGAAAGAATTACGGAGACTTAGAAGAATACAGTAAAGCTGAA
ATCTACTTAAAAAAAGCAGCGGAGATTTCTGAAAAGTATAAATTGGGCAACCTTCCGCATTCCTTGTTTACATACGCAAA
GCTTCTATTTAAACAAGGGAAAACAAGCGAGGCGATTCAAATCAGCAAAAAAGGACTTTCATCAGCGATATATCAAGGGG
ATAAGCTGTTTGAATCTCTGCAAAAATATTTGGAGGCTTTATACATTAACGCAATAGACCAAATGGGAATCAAAAAAACA
ATTGATTACCTTGAGAAAAATAAGAACTATTCGTATGTAGAAGATATTGCTCTTGATACGGCTGCTGTTTATGCAGAGTC
AAAGCAATATGACAAATCATATATTTATCATCAAAAAATGATTCAAACGCAAAAACAAATTCAGAGGGGAGAATGCCTGT
ATGAATTTTAG

Domains

Predicted by InterProScan.

Tetratricopeptide repeat (TPR_12)

(193-252)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.327

100

0.447
  rapF Bacillus subtilis subsp. subtilis str. 168

40.633

100

0.41