Detailed information NTG0435967

Bioinformatically predicted

Overview

• Name: recD/recD2/recDB
• Type: Machinery gene
• Locus tag: IL989_RS12380
• Genome accession: NZ_CP062984
• Coordinates: 2527366..2529744 (-)
• Length: 792 a.a.
• NCBI ID: WP_193350483.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain PP19 isolate PP19
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2522366..2534744

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IL989_RS12345 (IL989_12345)	-	2523447..2524175 (+)	729	WP_193350482.1	amino acid ABC transporter ATP-binding protein	-
IL989_RS12350 (IL989_12350)	-	2524253..2525023 (+)	771	WP_193351930.1	transporter substrate-binding domain-containing protein	-
IL989_RS12355 (IL989_12355)	-	2525081..2525731 (+)	651	WP_061573720.1	amino acid ABC transporter permease	-
IL989_RS12360 (IL989_12360)	-	2525750..2526406 (+)	657	WP_065522692.1	amino acid ABC transporter permease	-
IL989_RS12365 (IL989_12365)	-	2526440..2526571 (-)	132	WP_003152741.1	YrzQ family protein	-
IL989_RS12370 (IL989_12370)	-	2526593..2526784 (-)	192	WP_003152738.1	hypothetical protein	-
IL989_RS12375 (IL989_12375)	-	2526797..2527255 (-)	459	WP_014470766.1	hypothetical protein	-
IL989_RS12380 (IL989_12380)	recD/recD2/recDB	2527366..2529744 (-)	2379	WP_193350483.1	ATP-dependent RecD-like DNA helicase	Machinery gene
IL989_RS12385 (IL989_12385)	-	2529763..2530383 (-)	621	WP_193351931.1	lipopolysaccharide assembly protein LapB	-
IL989_RS12390 (IL989_12390)	mnmA	2530471..2531586 (-)	1116	WP_193350484.1	tRNA 2-thiouridine(34) synthase MnmA	-
IL989_RS12395 (IL989_12395)	-	2531623..2532762 (-)	1140	WP_193350485.1	cysteine desulfurase family protein	-
IL989_RS12400 (IL989_12400)	cymR	2532781..2533197 (-)	417	WP_013353022.1	cysteine metabolism transcriptional regulator CymR	-
IL989_RS12405 (IL989_12405)	rarA	2533392..2534660 (+)	1269	WP_193350486.1	replication-associated recombination protein A	Machinery gene

Sequence

Protein

• Length: 792 a.a.
• Molecular weight: 88388.13 Da
• Isoelectric Point: 4.9881

>NTDB_id=435967 IL989_RS12380 WP_193350483.1 2527366..2529744(-) (recD/recD2/recDB) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
MDQLKIEEQPYVKGVIHTVIYHNDTNLYTVLKVKVAETSEAIEDKVVSVTGYFPLLQEDETYTFYGKTATHPKFGLQFQA
EHFKKEIPTTKEGIIHYLSSDLFEGIGKKTAEEIVKKLGDGALNKILADASVLYDVPKMSKKKADKLAGELQRHQGLEQI
MISLNQYGFGPQLSMKIYQAYETETLEKIQENPYQLVKDVEGIGFVKADELGEKMGLSGNHPERIKAAILYTIESTCLSE
GHTYIDTKQLIINTQTLLNQSADGGRVTEMDAADGIIALGESKDIVIEGDRCYFPSLFYAEQNVAKRVLDIAAQTEYADQ
FPESEFLLALGELEERMKVQYAPSQKDAIQKALSSPILLLTGGPGTGKTTVIKGIVELYSELHGVSLDPGDYKKDETFPV
LLAAPTGRAAKRMSESTGLPAVTIHRLLGWNGAEGFTYNEDQPIEGKLIIIDEASMLDIWLASHLFKALPKHIQLIVVGD
EDQLPSVGPGQVLRDLLASEVLPTVRLTDIYRQAEGSSIVELAHDMKKGLLPKGLTAPTKDRSFIRCNSAQIKEVVDQVV
SNALKKGYTSRDIQVLAPMYRGKAGINELNMLLQDIMNPPKEKRRELKFGDVVYRTGDKILQLVNQPENNVFNGDIGEIV
SIFYAKENTEKEDMVVVSFDGNEITFTKKDFSQFTHAYCCSIHKSQGSEFPIVVLPVVKGYYRMLRRNLLYTAITRAKKF
LILCGEEEALEWGVKNNDATVRQTSLKNRLTEQTEEMDAELAALQKELPFSVYDANIGMEGITPFDFMEEKA

Nucleotide

• Length: 2379 bp

>NTDB_id=435967 IL989_RS12380 WP_193350483.1 2527366..2529744(-) (recD/recD2/recDB) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
GTGGATCAGCTGAAAATCGAGGAACAACCGTATGTAAAAGGCGTCATTCATACGGTCATTTACCACAATGACACCAACCT
GTATACAGTGCTGAAAGTCAAGGTTGCAGAAACGTCTGAGGCGATCGAAGACAAGGTCGTATCCGTAACGGGCTACTTCC
CTCTGCTGCAAGAAGATGAGACTTACACATTTTACGGAAAAACCGCCACACACCCCAAGTTCGGCCTGCAATTCCAGGCT
GAACACTTTAAAAAAGAAATTCCGACCACAAAAGAAGGGATTATTCACTATTTATCAAGCGATCTGTTTGAAGGAATCGG
AAAAAAAACGGCGGAAGAAATCGTCAAAAAGCTTGGAGACGGCGCGCTGAATAAAATTCTGGCTGATGCGTCGGTGCTTT
ACGATGTGCCGAAAATGTCCAAAAAGAAAGCGGATAAGCTTGCCGGAGAGCTGCAGCGGCATCAGGGGCTGGAGCAGATT
ATGATTTCTCTTAACCAATATGGTTTCGGACCTCAGCTTTCCATGAAAATTTATCAGGCTTACGAAACGGAAACCCTTGA
GAAAATTCAGGAGAATCCTTATCAGCTTGTAAAGGACGTGGAAGGCATCGGCTTTGTAAAAGCCGACGAGCTGGGCGAAA
AAATGGGTCTGTCAGGGAACCATCCCGAGCGGATCAAAGCGGCGATCTTATATACGATTGAATCGACCTGCCTTTCAGAA
GGTCATACGTACATAGACACAAAGCAGCTGATTATCAATACGCAAACGCTTCTGAATCAGTCAGCTGACGGAGGCCGGGT
CACGGAAATGGATGCGGCTGACGGCATCATCGCCCTCGGAGAGAGTAAGGACATCGTCATAGAAGGAGACCGCTGCTATT
TTCCGTCTTTGTTTTACGCGGAACAAAATGTCGCAAAACGCGTGCTCGACATTGCGGCTCAGACGGAGTATGCCGATCAA
TTTCCTGAATCGGAATTTCTGCTTGCGCTCGGCGAACTGGAAGAACGGATGAAAGTTCAATACGCTCCGAGCCAAAAGGA
TGCCATTCAAAAAGCGCTGTCTTCGCCGATACTTTTACTGACCGGAGGACCGGGTACGGGAAAAACGACCGTTATCAAAG
GAATCGTGGAATTATACAGTGAACTCCACGGCGTATCGCTTGATCCCGGTGATTATAAAAAAGACGAGACGTTTCCGGTG
CTGCTTGCCGCGCCGACCGGAAGAGCCGCAAAACGGATGAGCGAATCTACGGGTCTGCCGGCTGTTACGATTCACAGACT
GCTCGGCTGGAATGGCGCTGAAGGCTTTACCTACAATGAAGATCAGCCGATTGAAGGGAAACTGATCATTATAGACGAAG
CGAGTATGCTCGATATTTGGCTCGCCAGCCATTTGTTTAAGGCGCTCCCTAAGCACATCCAGCTCATCGTCGTCGGTGAT
GAAGATCAGCTTCCTTCCGTGGGGCCGGGGCAGGTGCTGAGAGACCTTTTGGCTTCTGAGGTGCTGCCGACCGTGCGCCT
GACAGATATTTACCGTCAGGCGGAAGGGTCATCCATCGTCGAACTTGCCCATGATATGAAAAAAGGGCTGCTTCCAAAAG
GACTGACCGCGCCGACAAAAGACCGCTCATTTATCCGCTGTAATTCTGCACAGATTAAAGAAGTCGTCGATCAAGTCGTT
TCAAACGCGTTAAAGAAGGGATATACCTCCAGAGATATTCAAGTGCTTGCGCCGATGTACAGGGGAAAAGCGGGAATTAA
CGAGCTGAATATGCTTCTTCAAGACATCATGAATCCGCCGAAAGAAAAAAGGCGGGAGCTGAAATTCGGAGATGTCGTCT
ACAGGACGGGCGATAAAATATTGCAGCTTGTCAACCAGCCGGAAAACAATGTGTTTAACGGTGATATCGGCGAAATCGTG
TCCATTTTTTATGCCAAAGAAAATACGGAAAAAGAAGACATGGTCGTCGTTTCGTTTGACGGCAATGAAATCACCTTTAC
GAAAAAGGATTTCAGCCAGTTTACCCATGCTTACTGCTGTTCCATCCATAAGTCTCAGGGAAGTGAATTTCCGATTGTCG
TGCTGCCGGTCGTCAAAGGCTACTATCGAATGCTTAGGAGAAATCTCCTTTATACCGCCATTACAAGGGCCAAGAAATTT
CTGATTCTTTGCGGAGAAGAAGAAGCGCTTGAATGGGGTGTCAAAAACAATGATGCCACCGTCAGACAGACGTCGCTTAA
GAACAGGCTCACAGAGCAGACTGAAGAGATGGATGCAGAACTGGCCGCTCTGCAAAAAGAACTGCCGTTCAGTGTATATG
ATGCGAACATCGGAATGGAAGGCATTACGCCGTTTGACTTTATGGAAGAAAAAGCGTAA

Domains

Predicted by InterProScan.

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (589-659)

• AAA domain (AAA_30) (341-548)

• Helix-hairpin-helix containing domain (HHH_RecD2) (154-244)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (676-724)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD/recD2/recDB	Bacillus subtilis subsp. subtilis str. 168	88.496	99.874	0.884