Detailed information NTG0435968

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: IL989_RS12405
• Genome accession: NZ_CP062984
• Coordinates: 2533392..2534660 (+)
• Length: 422 a.a.
• NCBI ID: WP_193350486.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain PP19 isolate PP19
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2528392..2539660

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IL989_RS12385 (IL989_12385)	-	2529763..2530383 (-)	621	WP_193351931.1	lipopolysaccharide assembly protein LapB	-
IL989_RS12390 (IL989_12390)	mnmA	2530471..2531586 (-)	1116	WP_193350484.1	tRNA 2-thiouridine(34) synthase MnmA	-
IL989_RS12395 (IL989_12395)	-	2531623..2532762 (-)	1140	WP_193350485.1	cysteine desulfurase family protein	-
IL989_RS12400 (IL989_12400)	cymR	2532781..2533197 (-)	417	WP_013353022.1	cysteine metabolism transcriptional regulator CymR	-
IL989_RS12405 (IL989_12405)	rarA	2533392..2534660 (+)	1269	WP_193350486.1	replication-associated recombination protein A	Machinery gene
IL989_RS12410 (IL989_12410)	-	2534777..2535541 (-)	765	WP_193350487.1	ThiF family adenylyltransferase	-
IL989_RS12420 (IL989_12420)	aspS	2535867..2537645 (-)	1779	WP_125123026.1	aspartate--tRNA ligase	-
IL989_RS12425 (IL989_12425)	hisS	2537660..2538934 (-)	1275	WP_193350488.1	histidine--tRNA ligase	-
IL989_RS12430 (IL989_12430)	-	2539314..2539484 (-)	171	WP_014470770.1	YrzK family protein	-

Sequence

Protein

• Length: 422 a.a.
• Molecular weight: 46655.54 Da
• Isoelectric Point: 8.5461

>NTDB_id=435968 IL989_RS12405 WP_193350486.1 2533392..2534660(+) (rarA) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
MKPLAYRMRPANIEDIIGQEHLVKEDKIIGRMVRAKHLSSMILYGPPGIGKTSIATAIAGSTSIAFRKLNAVIHNKKDME
IVVQEAKMSGQVILILDEVHRLDKGKQDFLLPYLENGMIILIGATTANPYHAINPAIRSRTQIFELEPLTPDLIKQALRR
ALTDEHRGLGSYSVSVDDDAMDHFAQGCGGDVRSALNALELAVLSTKESSDGTIRITRETAEECLQKKSYAHDKDGDAHY
DVLSAFQKSIRGSDANAALHYLARLIEAGDLESISRRLLVIAYEDIGLASPQAGPRVLSAIQTAERIGFPEARIPLANAV
IELCLSPKSNSAISAVDEALKDIRSGKIGDVPKHLKDAHYKGAQELGRGIGYQYPHDFENGWVEQQYLPDPLKNKRYYKP
KQTGKFEAAIKQVYEKLLKQKK

Nucleotide

• Length: 1269 bp

>NTDB_id=435968 IL989_RS12405 WP_193350486.1 2533392..2534660(+) (rarA) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
ATGAAACCATTGGCGTATCGGATGCGGCCTGCCAATATCGAAGACATTATCGGCCAGGAACATTTGGTCAAAGAAGATAA
AATCATCGGCAGAATGGTGCGCGCAAAGCACCTATCATCCATGATCCTGTACGGACCGCCAGGCATCGGAAAAACGTCCA
TCGCCACAGCGATCGCAGGATCGACAAGCATCGCATTCAGAAAATTGAATGCCGTCATTCATAATAAAAAAGACATGGAA
ATTGTCGTACAGGAAGCGAAAATGTCAGGCCAGGTCATCTTAATACTTGATGAAGTGCACAGGCTTGATAAGGGGAAGCA
GGATTTTCTCCTGCCCTATTTAGAAAACGGCATGATTATTTTAATCGGCGCGACGACAGCCAATCCTTATCATGCCATTA
ATCCGGCCATCAGAAGCCGTACCCAGATATTCGAACTCGAACCGTTAACACCGGATCTGATCAAGCAGGCATTGAGAAGA
GCGCTCACAGATGAACACCGGGGACTCGGTTCCTACAGCGTTTCGGTGGACGACGACGCGATGGATCATTTCGCGCAAGG
GTGCGGAGGAGACGTCCGCTCCGCTTTGAACGCACTGGAGCTTGCCGTGCTTTCCACAAAGGAATCAAGTGACGGCACGA
TCCGCATTACGCGAGAAACAGCGGAAGAATGTCTGCAGAAAAAAAGCTATGCCCATGATAAAGACGGAGATGCGCATTAT
GACGTCTTATCCGCATTCCAAAAATCAATCCGCGGCTCAGACGCAAACGCCGCACTGCATTATTTAGCCCGACTGATCGA
AGCCGGCGATCTTGAAAGCATTTCAAGAAGACTTCTCGTGATCGCCTATGAAGATATCGGCCTTGCAAGCCCGCAGGCAG
GCCCCCGGGTGCTGAGCGCGATTCAGACTGCAGAGCGGATCGGCTTTCCCGAAGCGAGAATTCCGCTGGCGAATGCGGTA
ATCGAATTATGCCTTTCGCCAAAATCAAACTCCGCCATCTCAGCCGTTGATGAAGCGCTCAAAGATATCAGATCGGGTAA
AATCGGCGATGTGCCGAAACATTTAAAAGACGCCCACTATAAAGGAGCCCAAGAGCTCGGACGCGGAATCGGCTATCAAT
ATCCTCACGATTTCGAAAACGGATGGGTCGAACAGCAATATTTGCCTGATCCGTTAAAAAACAAACGATACTATAAACCG
AAACAAACGGGGAAATTTGAAGCCGCCATAAAGCAAGTGTATGAAAAACTGCTTAAGCAGAAAAAATAA

Domains

Predicted by InterProScan.

• MgsA AAA+ ATPase C terminal (MgsA_C) (252-417)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (8-125)

• AAA C-terminal domain (AAA_assoc_2) (172-251)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	90.736	99.763	0.905