Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   IL989_RS08780 Genome accession   NZ_CP062984
Coordinates   1821149..1821511 (+) Length   120 a.a.
NCBI ID   WP_013352421.1    Uniprot ID   A0A9P1JH52
Organism   Bacillus amyloliquefaciens strain PP19 isolate PP19     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1816149..1826511
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IL989_RS08750 (IL989_08750) - 1816605..1816838 (+) 234 WP_003153997.1 DUF896 domain-containing protein -
  IL989_RS08755 (IL989_08755) recP/tkt 1817005..1819008 (+) 2004 WP_193351838.1 transketolase Machinery gene
  IL989_RS08760 (IL989_08760) sirA 1819159..1819605 (+) 447 WP_013352418.1 sporulation inhibitor of replication protein SirA -
  IL989_RS08765 (IL989_08765) - 1819691..1819909 (+) 219 WP_003153994.1 YneF family protein -
  IL989_RS08770 (IL989_08770) - 1819982..1820155 (-) 174 WP_088030684.1 aspartyl-phosphate phosphatase Spo0E family protein -
  IL989_RS08775 (IL989_08775) - 1820357..1821064 (+) 708 WP_088030531.1 cytochrome c biogenesis protein CcdA -
  IL989_RS08780 (IL989_08780) pilH 1821149..1821511 (+) 363 WP_013352421.1 response regulator Machinery gene
  IL989_RS08785 (IL989_08785) - 1821591..1822082 (+) 492 WP_088030532.1 CcdC family protein -
  IL989_RS08790 (IL989_08790) - 1822110..1822538 (-) 429 WP_065521209.1 DUF2621 domain-containing protein -
  IL989_RS08795 (IL989_08795) - 1822772..1823143 (-) 372 WP_193351839.1 Hsp20/alpha crystallin family protein -
  IL989_RS08800 (IL989_08800) - 1823237..1823383 (-) 147 WP_003153984.1 small acid-soluble spore protein P -
  IL989_RS08805 (IL989_08805) sspO 1823413..1823559 (-) 147 WP_003153982.1 acid-soluble spore protein SspO -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13259.62 Da        Isoelectric Point: 5.2063

>NTDB_id=435944 IL989_RS08780 WP_013352421.1 1821149..1821511(+) (pilH) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
MTRVLVVDDAKFMRVKIREILESANYIVAGEAADGEEALAVYQKIRPDLVTMDITMPVKNGIQALQDILAFDPKAHVIMC
TAMRQQRIVLEAIELGAKDFIVKPFEASKVLEAVGRVTGT

Nucleotide


Download         Length: 363 bp        

>NTDB_id=435944 IL989_RS08780 WP_013352421.1 1821149..1821511(+) (pilH) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
ATGACACGAGTTTTAGTTGTAGATGACGCCAAGTTCATGAGGGTGAAAATCAGAGAAATTCTGGAATCGGCGAATTACAT
AGTGGCCGGAGAAGCGGCTGACGGCGAGGAAGCCCTGGCGGTATATCAAAAAATCCGTCCCGACCTGGTGACAATGGATA
TTACCATGCCGGTCAAAAACGGTATACAGGCGCTGCAGGATATTTTAGCTTTTGACCCGAAAGCCCATGTCATCATGTGC
ACCGCCATGCGGCAGCAGCGGATCGTTCTGGAAGCGATTGAATTAGGCGCTAAAGACTTTATCGTTAAACCGTTTGAAGC
TTCTAAAGTGCTGGAGGCCGTAGGCAGGGTAACGGGAACGTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9P1JH52

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.667

100

0.367