Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   IL989_RS08330 Genome accession   NZ_CP062984
Coordinates   1679503..1679934 (+) Length   143 a.a.
NCBI ID   WP_045506081.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain PP19 isolate PP19     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1674503..1684934
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IL989_RS08310 (IL989_08310) spoVS 1675074..1675334 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  IL989_RS08315 (IL989_08315) tdh 1675591..1676637 (+) 1047 WP_193351799.1 L-threonine 3-dehydrogenase -
  IL989_RS08320 (IL989_08320) - 1676653..1677828 (+) 1176 WP_065521262.1 glycine C-acetyltransferase -
  IL989_RS08325 (IL989_08325) miaB 1677971..1679500 (+) 1530 WP_007611533.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  IL989_RS08330 (IL989_08330) ymcA 1679503..1679934 (+) 432 WP_045506081.1 RicAFT regulatory complex protein RicA family protein Regulator
  IL989_RS08335 (IL989_08335) cotE 1680188..1680733 (+) 546 WP_013352324.1 outer spore coat protein CotE -
  IL989_RS08340 (IL989_08340) hexA 1680849..1683434 (+) 2586 WP_014470386.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16114.26 Da        Isoelectric Point: 5.0213

>NTDB_id=435938 IL989_RS08330 WP_045506081.1 1679503..1679934(+) (ymcA) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENEKVSVIINQIKALQKQAVNLKHYEKLEALKQVESKIDALQE
ELEGIPIIQEFRDSQIEVNDLLQLVAHTISNQVTNEIITSTGGNLLTGETGSKVKHSNNSCSF

Nucleotide


Download         Length: 432 bp        

>NTDB_id=435938 IL989_RS08330 WP_045506081.1 1679503..1679934(+) (ymcA) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
ATGACGCTTTACTCTAAGAAAGACATTGTACAGCAGGCCAGGAACCTTGCGAAAATGATTTCTGAAACAGAAGAAGTTGA
TTTTTTCAAACGCGCCGAGGCGCAGATTAATGAAAATGAAAAAGTCTCTGTGATTATTAATCAGATTAAAGCCCTGCAAA
AGCAAGCCGTTAACCTGAAGCATTACGAAAAGCTTGAAGCTTTGAAACAAGTGGAAAGTAAAATTGACGCCCTGCAGGAA
GAGCTTGAAGGGATTCCGATCATTCAGGAATTCAGAGATTCCCAGATTGAGGTTAATGACCTTCTTCAGCTTGTCGCTCA
TACGATTTCCAATCAGGTGACAAATGAAATCATTACGTCTACCGGCGGCAACCTGCTGACGGGAGAAACCGGTTCAAAAG
TAAAACATTCGAATAACAGCTGTTCCTTTTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

92.308

100

0.923