Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   IL989_RS07985 Genome accession   NZ_CP062984
Coordinates   1605526..1605888 (+) Length   120 a.a.
NCBI ID   WP_003154238.1    Uniprot ID   A0A150FA43
Organism   Bacillus amyloliquefaciens strain PP19 isolate PP19     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1600526..1610888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IL989_RS07955 (IL989_07955) flgD 1601441..1601872 (+) 432 WP_071346811.1 flagellar hook assembly protein FlgD -
  IL989_RS07960 (IL989_07960) flgG 1601897..1602673 (+) 777 WP_013352263.1 flagellar basal body rod protein FlgG -
  IL989_RS07965 (IL989_07965) - 1602713..1602928 (+) 216 WP_193351788.1 flagellar FlbD family protein -
  IL989_RS07970 (IL989_07970) fliL 1602925..1603344 (+) 420 WP_013352265.1 flagellar basal body-associated protein FliL -
  IL989_RS07975 (IL989_07975) fliM 1603378..1604376 (+) 999 WP_013352266.1 flagellar motor switch protein FliM -
  IL989_RS07980 (IL989_07980) fliY 1604366..1605499 (+) 1134 WP_013352267.1 flagellar motor switch phosphatase FliY -
  IL989_RS07985 (IL989_07985) pilH 1605526..1605888 (+) 363 WP_003154238.1 chemotaxis protein CheY Machinery gene
  IL989_RS07990 (IL989_07990) fliZ 1605903..1606556 (+) 654 WP_013352268.1 flagella biosynthesis regulatory protein FliZ -
  IL989_RS07995 (IL989_07995) fliP 1606549..1607214 (+) 666 WP_013352269.1 flagellar type III secretion system pore protein FliP -
  IL989_RS08000 (IL989_08000) fliQ 1607229..1607498 (+) 270 WP_013352270.1 flagellar biosynthesis protein FliQ -
  IL989_RS08005 (IL989_08005) fliR 1607505..1608284 (+) 780 WP_045506167.1 flagellar biosynthetic protein FliR -
  IL989_RS08010 (IL989_08010) flhB 1608284..1609363 (+) 1080 WP_013352272.1 flagellar biosynthesis protein FlhB -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13209.53 Da        Isoelectric Point: 4.6805

>NTDB_id=435934 IL989_RS07985 WP_003154238.1 1605526..1605888(+) (pilH) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
MAHRILIVDDAAFMRMMIKDILVKNGFDVVAEASDGAQAVEKFKEHSPDLVTMDITMPEMDGITALKEIKQIDPQAKIIM
CSAMGQQSMVIDAIQAGAKDFIVKPFQADRVLEAINKTLS

Nucleotide


Download         Length: 363 bp        

>NTDB_id=435934 IL989_RS07985 WP_003154238.1 1605526..1605888(+) (pilH) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
ATGGCACACAGAATTTTAATTGTAGACGATGCAGCATTTATGAGAATGATGATCAAGGATATTTTAGTGAAGAACGGTTT
TGACGTTGTTGCTGAAGCTTCGGACGGAGCACAGGCAGTCGAAAAATTCAAAGAGCATTCACCCGACCTTGTGACAATGG
ATATTACAATGCCTGAAATGGACGGGATTACCGCATTAAAGGAAATTAAACAAATCGATCCGCAGGCGAAAATCATCATG
TGTTCGGCTATGGGGCAGCAGTCAATGGTTATTGACGCGATTCAAGCCGGCGCAAAAGACTTTATCGTGAAGCCATTCCA
AGCAGACCGCGTGCTTGAAGCCATTAATAAAACATTAAGCTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A150FA43

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

38.983

98.333

0.383