Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   IL989_RS06025 Genome accession   NZ_CP062984
Coordinates   1182531..1183667 (+) Length   378 a.a.
NCBI ID   WP_088030497.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain PP19 isolate PP19     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1177531..1188667
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IL989_RS06000 (IL989_06000) - 1178207..1178635 (+) 429 Protein_1130 glucuronate isomerase -
  IL989_RS06005 (IL989_06005) - 1178761..1179759 (+) 999 WP_193351626.1 LacI family DNA-binding transcriptional regulator -
  IL989_RS19230 - 1179834..1179968 (+) 135 WP_264372521.1 hypothetical protein -
  IL989_RS06010 (IL989_06010) - 1179908..1180918 (+) 1011 Protein_1133 UxaA family hydrolase -
  IL989_RS06015 (IL989_06015) - 1180951..1181715 (-) 765 WP_013351927.1 sulfite exporter TauE/SafE family protein -
  IL989_RS06020 (IL989_06020) - 1181859..1182326 (-) 468 WP_193351627.1 DinB family protein -
  IL989_RS06025 (IL989_06025) rapC 1182531..1183667 (+) 1137 WP_088030497.1 tetratricopeptide repeat protein Regulator
  IL989_RS06030 (IL989_06030) - 1183657..1183791 (+) 135 WP_193351628.1 PhrA family phosphatase inhibitor -
  IL989_RS06035 (IL989_06035) - 1183935..1184888 (+) 954 WP_193351629.1 N-acetylmuramoyl-L-alanine amidase -
  IL989_RS06040 (IL989_06040) - 1184926..1185303 (-) 378 WP_193351630.1 PH domain-containing protein -
  IL989_RS06045 (IL989_06045) - 1185413..1186015 (+) 603 WP_193351631.1 poly-gamma-glutamate hydrolase family protein -
  IL989_RS06050 (IL989_06050) - 1186183..1186773 (-) 591 WP_193351632.1 ImmA/IrrE family metallo-endopeptidase -
  IL989_RS06055 (IL989_06055) xre 1186921..1187259 (-) 339 WP_065981233.1 HTH-type transcriptional regulator Xre -
  IL989_RS06060 (IL989_06060) - 1187450..1187629 (+) 180 WP_013351935.1 hypothetical protein -
  IL989_RS06065 (IL989_06065) - 1187619..1188446 (+) 828 WP_193351913.1 phage portal protein -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 45044.33 Da        Isoelectric Point: 5.0536

>NTDB_id=435917 IL989_RS06025 WP_088030497.1 1182531..1183667(+) (rapC) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
MRMKQTIPSSFVGLKINEWYTHIRQFHVLEAERVKREVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPLKEDPSQPE
FSELLEDIEGNQYKLTGLLDYYFNFFRGMYEFKQKMFLNAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQSYETYNVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKQEGNPRLISSALYNLGNCYEKMGDLSK
AAEYFETSVSICKSEKFDNLPHSIYSLTQVLYKQNTTAEAEKQYRLGLSIAREYNDELFVNLFQFLHALYGKKMDNASVR
HTFDFLEEHMLYPYVEELAHDAAKFYMKHGQPEKALTFYEKMVHAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=435917 IL989_RS06025 WP_088030497.1 1182531..1183667(+) (rapC) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
TTGAGGATGAAGCAGACTATTCCGTCCTCTTTTGTCGGGCTCAAAATTAATGAATGGTACACCCATATCCGGCAGTTTCA
CGTCCTTGAGGCGGAGCGCGTCAAACGTGAAGTAGAGAGAGAGATCGAGGATATGGAAGAAGATCAGGATCTGCTCTTGT
ATTATTCATTAATGGAATTCAGACACCGTGTCATGCTGGATTACATTAAGCCCTTAAAGGAGGACCCTTCTCAGCCTGAG
TTTTCAGAATTATTGGAAGACATTGAAGGCAACCAGTATAAACTGACAGGACTGCTTGATTACTATTTTAATTTTTTTCG
AGGAATGTATGAATTTAAACAGAAAATGTTCCTAAACGCCATGATGTATTACAAACGGGCTGAAAAAAACCTCGCACTCG
TTTCTGATGACATCGAGAAAGCTGAGTTTGCTTTTAAAATGGCCGAGATTTTTTACAACTTGAAACAAACCTACGTCTCC
ATGAGCTATGCGGTACAAGCCCTTGAAACGTACCAATCGTATGAGACGTACAACGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGGAATTATGATGACATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTTGCTTTAGATCTTGCAAAAC
AAGAAGGCAATCCACGTCTTATCAGTTCAGCCTTATATAATCTCGGAAACTGTTACGAAAAAATGGGAGACCTCTCTAAA
GCAGCCGAATATTTTGAGACATCCGTTTCCATTTGCAAGTCAGAAAAGTTCGATAATCTTCCGCATTCTATTTACTCATT
AACACAGGTTCTTTATAAACAGAACACCACCGCCGAAGCAGAGAAGCAATACCGCCTCGGGCTGAGTATCGCCCGCGAAT
ACAATGATGAATTGTTTGTAAATCTCTTTCAATTTTTACATGCGTTATACGGCAAGAAAATGGATAACGCATCCGTCAGG
CACACGTTTGATTTTCTGGAGGAACACATGCTGTATCCGTATGTGGAAGAATTGGCGCATGACGCTGCCAAATTTTACAT
GAAACACGGACAGCCTGAAAAAGCACTCACGTTTTATGAAAAAATGGTGCACGCCCAAAAACAAATCCAGAGAGGAGATT
GTCTATATGAAATCTAA

Domains

Predicted by InterProScan.

Tetratricopeptide repeat (TPR_12)

(199-254)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.415

99.471

0.442
  rapF Bacillus subtilis subsp. subtilis str. 168

42.48

100

0.426