NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	GRB95_RS07610	Genome accession	NZ_CP051004
Coordinates	1476104..1476694 (-)	Length	196 a.a.
NCBI ID	WP_000613483.1	Uniprot ID	A0AAV3JHA0
Organism	Streptococcus agalactiae 515
Function	degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 1471104..1481694

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GRB95_RS07585 (GRB95_07585)	-	1471743..1472507 (-)	765	WP_001185985.1	ATP-binding cassette domain-containing protein	-
GRB95_RS07590 (GRB95_07590)	-	1472508..1473461 (-)	954	WP_000662328.1	branched-chain amino acid ABC transporter permease	-
GRB95_RS07595 (GRB95_07595)	-	1473464..1474333 (-)	870	WP_000941396.1	branched-chain amino acid ABC transporter permease	-
GRB95_RS07600 (GRB95_07600)	-	1474439..1475605 (-)	1167	WP_000415516.1	ABC transporter substrate-binding protein	-
GRB95_RS07605 (GRB95_07605)	-	1475759..1476004 (-)	246	WP_001041186.1	DUF2129 domain-containing protein	-
GRB95_RS07610 (GRB95_07610)	clpP	1476104..1476694 (-)	591	WP_000613483.1	ATP-dependent Clp protease proteolytic subunit	Regulator
GRB95_RS07615 (GRB95_07615)	upp	1476819..1477448 (-)	630	WP_000514490.1	uracil phosphoribosyltransferase	-
GRB95_RS07620 (GRB95_07620)	-	1477558..1478727 (-)	1170	WP_000634076.1	MalY/PatB family protein	-
GRB95_RS07625 (GRB95_07625)	-	1478863..1479411 (-)	549	WP_001019794.1	tRNA (cytidine(34)-2'-O)-methyltransferase	-
GRB95_RS07630 (GRB95_07630)	-	1479584..1480936 (-)	1353	WP_000427467.1	APC family permease	-

Sequence

Protein

Download Length: 196 a.a. Molecular weight: 21550.52 Da Isoelectric Point: 4.5933

                                >NTDB_id=435915 GRB95_RS07610 WP_000613483.1 1476104..1476694(-) (clpP) [Streptococcus agalactiae 515]

MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGQVEDNMANSIIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVDTMN

FIKSDVQTIVMGMAASMGTIIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQSDMAIAAEHLLKTRHTLEKILADNSGQ

SIEKVHDDAERDRWMSAQETLDYGFIDAIMENNNLQ

Nucleotide

Download Length: 591 bp

                                >NTDB_id=435915 GRB95_RS07610 WP_000613483.1 1476104..1476694(-) (clpP) [Streptococcus agalactiae 515]

ATGATTCCAGTAGTTATTGAACAAACAAGTCGTGGTGAACGCTCTTATGATATTTACTCACGTCTTTTAAAAGATCGTAT

TATTATGTTGACAGGCCAAGTTGAGGATAATATGGCCAATAGTATCATTGCACAGTTATTGTTTCTCGATGCACAAGATA

ATACAAAGGATATTTACCTTTATGTCAATACACCAGGTGGTTCAGTATCGGCTGGACTTGCTATTGTGGATACCATGAAC

TTTATTAAATCGGACGTACAGACGATTGTTATGGGGATGGCTGCTTCGATGGGAACCATTATTGCTTCGAGTGGTGCTAA

AGGAAAACGTTTTATGTTACCGAATGCAGAATATATGATCCACCAACCAATGGGTGGAACAGGCGGAGGCACACAGCAAT

CTGATATGGCTATCGCTGCTGAGCATCTTTTAAAAACGCGTCATACTTTAGAAAAAATCTTAGCTGATAATTCTGGTCAA

TCTATTGAAAAAGTCCATGATGATGCAGAGCGTGATCGTTGGATGAGTGCTCAAGAAACACTTGATTATGGCTTTATTGA

TGCTATTATGGAAAATAATAATCTACAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(11-192)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Streptococcus thermophilus LMG 18311	92.347	100	0.923
clpP	Streptococcus thermophilus LMD-9	92.347	100	0.923
clpP	Streptococcus pneumoniae Rx1	92.308	99.49	0.918
clpP	Streptococcus pneumoniae D39	92.308	99.49	0.918
clpP	Streptococcus pneumoniae R6	92.308	99.49	0.918
clpP	Streptococcus pneumoniae TIGR4	92.308	99.49	0.918
clpP	Streptococcus pyogenes JRS4	89.286	100	0.893
clpP	Streptococcus pyogenes MGAS315	89.286	100	0.893
clpP	Streptococcus mutans UA159	88.776	100	0.888
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	85.204	100	0.852
clpP	Lactococcus lactis subsp. cremoris KW2	84.694	100	0.847
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	58.031	98.469	0.571
clpP	Bacillus subtilis subsp. subtilis str. 168	57.895	96.939	0.561

Detailed information NTG0435915