Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcC   Type   Machinery gene
Locus tag   IL989_RS05215 Genome accession   NZ_CP062984
Coordinates   1036356..1039748 (+) Length   1130 a.a.
NCBI ID   WP_193351549.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain PP19 isolate PP19     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1031356..1044748
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IL989_RS05205 (IL989_05205) addA 1031416..1035120 (+) 3705 WP_193351908.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  IL989_RS05210 (IL989_05210) sbcD 1035187..1036359 (+) 1173 WP_071347113.1 exonuclease subunit SbcD -
  IL989_RS05215 (IL989_05215) sbcC 1036356..1039748 (+) 3393 WP_193351549.1 exonuclease subunit SbcC Machinery gene
  IL989_RS05220 (IL989_05220) - 1039764..1040063 (+) 300 WP_193351550.1 HNH endonuclease -
  IL989_RS05225 (IL989_05225) - 1040104..1040322 (-) 219 WP_013351765.1 spore germination protein -
  IL989_RS05230 (IL989_05230) - 1040362..1040757 (-) 396 WP_193351551.1 spore germination protein GerPE -
  IL989_RS05235 (IL989_05235) - 1040757..1040933 (-) 177 WP_013351767.1 hypothetical protein -
  IL989_RS05240 (IL989_05240) - 1040930..1041547 (-) 618 WP_193351909.1 spore germination protein GerPC -
  IL989_RS05245 (IL989_05245) - 1041582..1041818 (-) 237 WP_007409164.1 spore germination protein GerPB -
  IL989_RS05250 (IL989_05250) - 1041831..1042052 (-) 222 WP_003155135.1 spore germination protein -
  IL989_RS19340 - 1042349..1042462 (-) 114 Protein_981 aspartyl-phosphate phosphatase Spo0E family protein -
  IL989_RS05260 (IL989_05260) - 1042679..1043584 (+) 906 WP_193351552.1 fumarylacetoacetate hydrolase family protein -
  IL989_RS05265 (IL989_05265) - 1043679..1044035 (+) 357 WP_013351772.1 YisL family protein -

Sequence

Protein


Download         Length: 1130 a.a.        Molecular weight: 128119.08 Da        Isoelectric Point: 5.4597

>NTDB_id=435907 IL989_RS05215 WP_193351549.1 1036356..1039748(+) (sbcC) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
MKPILLTIKGLHSFREEQTIDFDGLSGAGVFGIFGPTGSGKSSILDAMTLALYGKVERAANNTHGILNHAEDQLAVSFTF
ALQSGHRVSYKVERVFKRTDETKVKTALCRLIEIKEEQTVLADKANEVNKKVEELLGLTIDDFTRAVVLPQGKFAEFLSL
KGAERRHMLQRLFNLEQYGDRLVKKLRRRAQEAAAKKNEMLAEQSGLGDAGEDALKLAEQQFHEANERLEAAEKKRVQAK
ERFENHQEIWNLQTERDEYEARQEKLEEKRPYITGLTGRLKEAETALALEPYADRYTEAVRRKERAEQEHELAKRKLEAE
TASFTRQNEAYEAWRVHKAEQEPKFVKEEELYQRLSAIEQKLLEAKKEAEKTKAEHSKKEEEYEAASKQLTAVKDRLTRG
QNRQNELKEELKAVQVTADERKKCQTAAQLSAGFQQTQEQITKERTNLTAQLKNIEKLNGESEALSAKAKSEEEDITRAY
QTLQTVYHMVCETEHSLKAAAERADKTQADLRKRSEEARTAALTKELSEKLIEGKPCPVCGSTQHDRSRSAHETYSPDTA
VQERLQQVEALLSEAAALSQEVLTAKVALEEQSGRFTEECPFLQNARVPELEAASSISGRPLDEAFSAVRLEWKQMKQDM
LSVKEKVTRLISTYQKTVKQAEQLAERIRYEEKEADRLRHLLEELESLSESRLNQYNEACGDIPLNRIDAWQASIDEKDR
QAEEFEKRIETSIAFLKEHEDEKERLQEKKHQLERERLELHYASERLQQVIDGYEQELGTAAEETSISAKLDAVRQELQL
LKSKEQSLFDALQQAQQSLNDAKGRESGSLMSLRDAESALEKAQNDWYGKSKDTGFAEPDQVKKSLLPKERAEEMKREID
EFLDGSKQLSANIRRVTDKLAGRRVTEEEWTASVSLLEQAEAESGAAKEEKGAQAKAFAVMQKQHKRFKEIEAELKSWQT
QIDRLDKLQSVCKGNTFVEFLAEEQLESVARDASARLGALTRQRYAILVDSEGGFVMRDDANGGVKRPVSSLSGGETFLT
SLSLALALSAQIQLRGQYPLQFFFLDEGFGTLDQGLLDTVVTALEKLQSDNLSVGVISHVQELRARLPKKLIVHPSEPGG
KGTRVTMEIM

Nucleotide


Download         Length: 3393 bp        

>NTDB_id=435907 IL989_RS05215 WP_193351549.1 1036356..1039748(+) (sbcC) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
ATGAAGCCGATTCTGTTAACGATAAAAGGGCTCCACAGCTTCAGAGAGGAACAGACCATTGACTTTGACGGACTGTCCGG
TGCCGGGGTGTTCGGAATTTTCGGCCCGACGGGAAGCGGAAAGTCGTCGATCCTTGATGCGATGACACTCGCTTTATACG
GAAAAGTGGAGCGCGCCGCAAATAATACGCACGGCATTCTGAACCACGCCGAAGATCAGCTCGCCGTCTCTTTTACATTC
GCGCTTCAATCCGGCCACAGGGTGTCCTACAAAGTAGAGCGCGTTTTTAAGAGAACGGATGAAACGAAAGTGAAAACCGC
CCTCTGCCGCTTGATTGAAATCAAAGAGGAACAAACCGTGCTTGCCGATAAAGCGAATGAAGTGAACAAAAAGGTGGAAG
AGCTTCTTGGTCTGACCATTGACGACTTTACAAGAGCCGTCGTGCTCCCGCAAGGAAAGTTTGCCGAGTTTCTGTCGCTG
AAAGGCGCGGAAAGAAGACATATGCTGCAGCGCCTTTTTAATCTGGAACAGTACGGTGACAGGCTTGTCAAAAAATTGCG
GCGGCGCGCGCAGGAAGCGGCAGCGAAAAAAAATGAGATGCTGGCCGAACAATCCGGCCTCGGAGACGCGGGGGAAGACG
CGCTGAAGCTGGCTGAACAGCAGTTTCATGAAGCGAATGAGCGGCTTGAAGCAGCTGAGAAGAAACGGGTCCAAGCAAAA
GAACGTTTTGAGAATCACCAGGAGATTTGGAACCTGCAGACAGAGAGAGACGAATATGAGGCGCGGCAGGAAAAGCTTGA
GGAAAAACGCCCGTATATCACGGGTTTGACTGGCCGTCTTAAAGAAGCGGAAACTGCTCTCGCTCTTGAACCGTATGCAG
ATCGCTACACGGAAGCCGTCCGCCGGAAGGAGCGCGCCGAGCAGGAGCACGAACTGGCCAAACGGAAATTAGAGGCGGAA
ACCGCTTCATTTACCCGGCAAAATGAAGCCTATGAAGCGTGGCGGGTTCATAAGGCTGAACAAGAGCCGAAGTTTGTCAA
GGAAGAAGAATTGTATCAAAGATTGTCAGCCATTGAACAAAAGCTGCTTGAAGCAAAAAAAGAAGCGGAAAAAACAAAGG
CGGAGCACAGCAAAAAAGAGGAAGAATACGAAGCCGCCTCGAAACAGCTGACCGCAGTGAAAGACCGCCTGACCCGCGGC
CAAAACAGGCAGAATGAGCTGAAAGAAGAGCTGAAAGCAGTTCAAGTGACCGCTGATGAACGGAAAAAATGCCAGACCGC
CGCACAGCTGTCAGCCGGCTTTCAGCAGACACAGGAACAAATCACGAAAGAACGAACCAATCTGACAGCCCAGTTGAAAA
ACATAGAGAAGCTGAACGGAGAAAGCGAGGCGCTCAGCGCAAAGGCGAAATCGGAAGAAGAGGACATTACGCGCGCTTAT
CAAACACTTCAAACCGTTTACCATATGGTCTGTGAAACGGAACATTCACTGAAAGCCGCAGCCGAACGGGCGGACAAAAC
GCAAGCCGATCTGCGCAAGCGCTCAGAGGAAGCGAGAACGGCTGCATTAACAAAAGAATTATCAGAAAAACTAATCGAAG
GAAAGCCTTGTCCTGTATGCGGCTCGACGCAGCATGACCGTTCGCGCTCCGCTCATGAAACATATTCGCCCGATACGGCT
GTACAGGAACGTTTGCAACAGGTTGAAGCGCTGCTTTCTGAGGCGGCGGCTCTTTCTCAGGAAGTGCTGACGGCCAAGGT
TGCATTAGAAGAGCAGTCGGGGCGTTTTACCGAAGAATGTCCGTTTCTGCAAAACGCCCGGGTCCCGGAGCTGGAAGCCG
CTTCTTCTATCAGCGGCCGTCCGCTTGATGAAGCGTTCAGCGCCGTCCGCCTGGAGTGGAAGCAAATGAAACAGGATATG
CTGTCGGTAAAAGAGAAGGTCACGAGACTGATCAGTACCTATCAAAAGACGGTGAAACAAGCTGAACAGCTGGCTGAACG
AATCCGCTATGAGGAAAAAGAAGCAGACCGCCTCAGACATTTATTAGAAGAGCTCGAATCACTGTCAGAAAGCCGCTTGA
ATCAGTACAACGAAGCCTGCGGGGATATTCCGTTAAACCGGATTGACGCCTGGCAGGCTTCGATAGACGAAAAGGACAGG
CAGGCAGAGGAATTCGAGAAGCGCATTGAAACAAGCATCGCATTCCTCAAGGAACATGAAGATGAGAAAGAACGGCTGCA
GGAGAAGAAGCATCAGCTTGAACGGGAACGGCTCGAGCTTCACTATGCGTCAGAGCGCCTGCAGCAGGTCATTGACGGAT
ATGAACAAGAGCTCGGAACAGCAGCTGAAGAAACATCCATTTCTGCAAAGCTTGACGCAGTGCGGCAGGAATTACAGCTC
TTAAAATCGAAAGAACAGTCGTTATTCGATGCGCTGCAGCAGGCTCAGCAATCACTCAATGACGCAAAAGGCCGGGAATC
CGGGAGCCTCATGTCACTGCGGGACGCTGAGTCCGCCCTTGAGAAAGCGCAAAATGACTGGTACGGGAAATCAAAAGACA
CCGGGTTTGCCGAGCCGGATCAAGTCAAAAAAAGCCTGCTTCCGAAAGAGCGGGCCGAGGAAATGAAAAGAGAAATTGAT
GAATTTCTGGACGGCTCAAAGCAGCTTTCGGCAAATATCCGCCGTGTCACTGATAAATTAGCCGGCCGCCGGGTAACGGA
AGAAGAATGGACAGCATCGGTTTCTCTGCTGGAGCAGGCAGAGGCTGAGTCAGGCGCCGCCAAGGAGGAAAAAGGGGCCC
AGGCAAAAGCCTTTGCGGTGATGCAAAAACAGCATAAGCGCTTTAAAGAGATTGAAGCCGAACTGAAAAGCTGGCAGACA
CAGATTGACAGGCTTGATAAGCTCCAGTCTGTATGTAAAGGCAATACATTCGTCGAATTTTTAGCGGAGGAACAGCTGGA
AAGCGTGGCCCGAGACGCCTCTGCCCGGCTTGGAGCGCTGACAAGACAGCGGTATGCCATATTAGTCGATTCAGAAGGCG
GCTTCGTCATGCGCGATGACGCGAACGGCGGCGTCAAACGCCCCGTATCAAGCCTTTCCGGCGGTGAGACGTTTCTGACA
TCGCTGTCGCTTGCGCTTGCCTTGTCTGCCCAGATTCAGCTGCGGGGGCAATATCCGCTGCAATTCTTTTTCTTAGATGA
AGGATTCGGGACGCTTGACCAAGGGCTTTTAGACACCGTTGTCACAGCGCTGGAAAAGCTGCAATCGGATAATTTGTCCG
TCGGGGTGATCAGCCATGTGCAGGAGCTCAGAGCGCGGCTGCCGAAAAAATTAATCGTTCATCCGTCCGAACCGGGCGGA
AAAGGCACCCGGGTCACAATGGAGATCATGTAG

Domains

Predicted by InterProScan.

SbcC/RAD50-like, Walker B motif (SbcC_Walker_B)

(1017-1085)

AAA domain (AAA_23)

(6-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcC Bacillus subtilis subsp. subtilis str. 168

64.425

100

0.644