Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   GRB95_RS04235 Genome accession   NZ_CP051004
Coordinates   774637..775584 (+) Length   315 a.a.
NCBI ID   WP_000903650.1    Uniprot ID   A0AAW6XQQ1
Organism   Streptococcus agalactiae 515     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 769637..780584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GRB95_RS04210 (GRB95_04210) - 769986..770666 (+) 681 WP_000656582.1 VIT family protein -
  GRB95_RS04215 (GRB95_04215) - 770817..771518 (+) 702 WP_001263956.1 glucosamine-6-phosphate deaminase -
  GRB95_RS04220 (GRB95_04220) - 771590..772546 (-) 957 WP_000523783.1 glutathione S-transferase family protein -
  GRB95_RS04225 (GRB95_04225) - 772642..773361 (+) 720 WP_001234962.1 pseudouridine synthase -
  GRB95_RS04230 (GRB95_04230) - 773434..774585 (+) 1152 WP_001086189.1 MFS transporter -
  GRB95_RS04235 (GRB95_04235) coiA 774637..775584 (+) 948 WP_000903650.1 competence protein CoiA family protein Machinery gene
  GRB95_RS04240 (GRB95_04240) pepF 775600..777405 (+) 1806 WP_001282905.1 oligoendopeptidase F Regulator
  GRB95_RS04245 (GRB95_04245) - 777600..778226 (+) 627 WP_000736939.1 HAD hydrolase-like protein -
  GRB95_RS04250 (GRB95_04250) - 778300..779007 (+) 708 WP_000250858.1 O-methyltransferase -
  GRB95_RS04255 (GRB95_04255) prsA 779068..779997 (+) 930 WP_000857818.1 peptidylprolyl isomerase PrsA -

Sequence

Protein


Download         Length: 315 a.a.        Molecular weight: 37813.53 Da        Isoelectric Point: 9.4972

>NTDB_id=435904 GRB95_RS04235 WP_000903650.1 774637..775584(+) (coiA) [Streptococcus agalactiae 515]
MLIAKDRQGNLINLLESHPGKGQYFCPTCCSAVRLKAGRIMRRHFAHISLKNCQFYHENESNEHLQLKAKLYMSLSRENE
TMLEHHLPEINQIADLFVNETLALEVQCSRLSEQRLRERTKAYLQADFQVRWLLGEKLWLKDRLTNLHKQFLQFSQSIGF
HIWELDLRLEVLRLKYLIYEDLRGHVYYLSKTCPLSGDVLAFLKWPYQSKNLNFYKVKQDRNIRDYVRQQLRYGNQFWLR
KQEKAYLSGQNLLTQELMMFFPQIQPPRVDTDFCQITNSLTSFYQNFTNYYQKNKNNLDQTLYPPVFYDKIVTKN

Nucleotide


Download         Length: 948 bp        

>NTDB_id=435904 GRB95_RS04235 WP_000903650.1 774637..775584(+) (coiA) [Streptococcus agalactiae 515]
ATGTTAATTGCTAAAGACAGACAAGGAAATTTAATTAATCTACTCGAGTCTCATCCGGGAAAGGGACAGTATTTTTGTCC
AACTTGTTGTTCAGCTGTAAGGTTAAAAGCAGGTCGAATCATGAGAAGACACTTTGCACATATTAGTCTAAAAAATTGTC
AGTTTTATCATGAAAATGAGTCTAACGAGCACTTGCAATTAAAAGCAAAGTTATATATGAGTTTAAGTAGAGAGAATGAA
ACTATGCTCGAGCATCATTTGCCAGAAATTAATCAGATTGCAGATTTATTTGTGAATGAGACATTGGCTTTAGAAGTTCA
GTGTAGCCGACTATCAGAGCAGCGACTCAGGGAGCGAACAAAAGCATATCTACAGGCAGACTTTCAAGTGAGATGGTTAC
TAGGGGAAAAACTCTGGTTAAAGGATCGTTTAACAAATCTACATAAACAATTTTTACAATTTTCTCAAAGTATCGGATTT
CATATTTGGGAGTTAGATTTGAGGTTAGAAGTACTGAGGCTAAAATATTTGATTTACGAAGATTTACGCGGACATGTCTA
TTACTTAAGTAAAACTTGCCCTCTTAGTGGAGACGTTCTAGCATTTTTGAAGTGGCCATACCAATCAAAAAATCTAAATT
TTTATAAGGTTAAACAAGACAGAAATATCAGAGATTATGTGCGTCAGCAGTTACGCTATGGCAATCAATTTTGGTTACGA
AAACAAGAAAAGGCCTACCTTTCTGGTCAGAATCTATTAACCCAAGAGCTAATGATGTTCTTCCCTCAAATACAGCCACC
ACGTGTAGATACTGATTTTTGTCAAATAACAAATTCTCTAACATCGTTTTATCAGAATTTTACAAATTATTATCAAAAAA
ATAAGAATAACTTGGACCAAACACTTTATCCCCCTGTATTTTATGATAAAATAGTCACTAAGAATTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-299)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus pneumoniae TIGR4

49.051

100

0.492
  coiA Streptococcus pneumoniae Rx1

49.051

100

0.492
  coiA Streptococcus pneumoniae D39

49.051

100

0.492
  coiA Streptococcus pneumoniae R6

49.051

100

0.492
  coiA Streptococcus mitis NCTC 12261

49.051

100

0.492
  coiA Lactococcus lactis subsp. cremoris KW2

40.062

100

0.41