Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcE   Type   Machinery gene
Locus tag   IL989_RS04870 Genome accession   NZ_CP062984
Coordinates   965485..968367 (+) Length   960 a.a.
NCBI ID   WP_013351701.1    Uniprot ID   A0A9P1JFQ3
Organism   Bacillus amyloliquefaciens strain PP19 isolate PP19     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 960485..973367
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IL989_RS04845 (IL989_04845) - 960921..961688 (+) 768 WP_013351696.1 enoyl-CoA hydratase -
  IL989_RS04850 (IL989_04850) - 961713..961898 (-) 186 WP_071347147.1 YhzD family protein -
  IL989_RS04855 (IL989_04855) - 962004..962900 (+) 897 WP_013351698.1 ABC transporter ATP-binding protein -
  IL989_RS04860 (IL989_04860) - 962893..964152 (+) 1260 WP_065521765.1 ABC transporter permease -
  IL989_RS04865 (IL989_04865) - 964265..965488 (+) 1224 WP_193351522.1 DNA repair exonuclease -
  IL989_RS04870 (IL989_04870) sbcE 965485..968367 (+) 2883 WP_013351701.1 AAA family ATPase Machinery gene
  IL989_RS04875 (IL989_04875) yhaM 968441..969385 (+) 945 WP_045507300.1 3'-5' exoribonuclease YhaM -
  IL989_RS04880 (IL989_04880) - 969501..969728 (+) 228 WP_013351703.1 sporulation YhaL family protein -
  IL989_RS04885 (IL989_04885) - 969767..970624 (-) 858 WP_014469996.1 peptidylprolyl isomerase -
  IL989_RS04890 (IL989_04890) - 970783..970869 (+) 87 WP_016938346.1 YjcZ family sporulation protein -
  IL989_RS04895 (IL989_04895) yhzE2 970993..971079 (+) 87 WP_013351705.1 sporulation protein YhzE2 -
  IL989_RS04900 (IL989_04900) - 971135..971353 (-) 219 WP_003155245.1 hypothetical protein -
  IL989_RS04905 (IL989_04905) - 971413..971943 (-) 531 WP_013351706.1 DUF3267 domain-containing protein -
  IL989_RS04910 (IL989_04910) - 972154..972495 (+) 342 WP_003155243.1 YhaI family protein -
  IL989_RS04915 (IL989_04915) - 972492..973103 (-) 612 WP_014469997.1 HTH-type transcriptional regulator Hpr -

Sequence

Protein


Download         Length: 960 a.a.        Molecular weight: 110084.06 Da        Isoelectric Point: 7.0395

>NTDB_id=435900 IL989_RS04870 WP_013351701.1 965485..968367(+) (sbcE) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
MKITALYIYQYGKFSNRSFQLSDSPVQVIYGLNEAGKTTLMSFIKSVLFGFPKSKKYEPKTGGVYGGVVELNHDDYGAVK
IERTKGAAEKVRVYTASGEIKDGKWLKQLLSDTDRALYEAIYSFDVFGLQEIQAFNRDKIGEFLLFSSLFGSEAAAKLDG
RLAKELERMYKPNGRNPRLNQELDTLKRLSAKLKQAETAEAGYHSLLEEKKSAGGRLQDAKAQLKDITEEIKTVKAAIEA
KPLADKKTALESELSSYPEAAEQFPKDGMHQLEKYESHLHPKAARLEGLRAKAAEIKRQADLLSPNEDMLQKERQLQELS
GEQHMYESRGEQLAAIQSQIRQTSARVSSGLQQLGRHEEDDILSLNTDYEYEWQLQEAVQSAGQARERKTQLDSLFEQAR
LELEDAERKHAVTAENVLEPAVRKEKEAALQAYKQTADTEGNEWQAHLRQLEKQRAKQKKLFLGTGILFIAIFVMLKEWL
PAALFTGALMLYVLTGMQKALPSERSRPGHKKQKPLISKEEADLLQEELWRDGQHRQQLIADQAVLEQKEAAYERVIRQY
EEWEAEMAPSEKKTEHFMKELGFSGSPSHLLDAYHVMKDVKKEILTKHELTIEAGRLQKLQRAFEERVKKLSPSDGRELS
VKERLHFLLQQAERAREDAKRKQALETDLLHTQEQIRELNEEVHYYEQQVKQLFTEAGAKNREHFCELGRLNESRRETER
KLCEIKTHLSGKGGKQLEPYMSRTVPELEHTAVQKEQEKETLEEKIAHLREQIALLTVKQEQLESSGLVSDLKQQTEMQK
ERVKKTAKEWAALQTVRHIIREKMERHKKVTLPRLLETAGALYGPLTDGRYQKLYFSEADDSIMVMQKDGTVFSASELSQ
AACEQLYAAIRFALASERESAVSLPFLLDDSFVHFDRERLQRLFDVLNQLSEGGRQILYFTCHEHVSRSFHSGQVMRLLS

Nucleotide


Download         Length: 2883 bp        

>NTDB_id=435900 IL989_RS04870 WP_013351701.1 965485..968367(+) (sbcE) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
ATGAAAATAACGGCGCTCTATATTTACCAGTACGGAAAATTTTCCAATCGAAGCTTTCAGCTGTCGGATTCCCCCGTACA
AGTCATCTACGGATTAAATGAAGCGGGCAAAACGACATTGATGTCCTTTATCAAAAGCGTCCTGTTCGGTTTTCCGAAAT
CAAAAAAATACGAACCGAAAACCGGCGGGGTTTACGGCGGCGTTGTGGAACTGAATCATGACGATTACGGTGCTGTCAAA
ATCGAACGGACAAAAGGGGCTGCCGAAAAAGTCAGAGTGTACACGGCTTCAGGCGAAATTAAGGACGGAAAATGGCTCAA
ACAGCTGCTTTCCGATACAGATCGTGCGCTGTACGAAGCGATCTATTCGTTTGATGTATTCGGACTGCAGGAGATTCAAG
CCTTTAACCGAGACAAAATCGGGGAGTTTCTCCTGTTTTCCAGCTTATTCGGGTCTGAAGCGGCGGCGAAGCTTGACGGC
AGACTGGCGAAAGAACTTGAAAGAATGTATAAGCCGAACGGGCGGAACCCCCGCTTAAATCAGGAATTGGATACATTAAA
GCGGCTCAGCGCCAAGCTCAAACAGGCGGAAACTGCGGAAGCGGGCTATCACAGCCTCCTGGAAGAGAAAAAAAGCGCCG
GCGGCCGTTTGCAGGATGCCAAAGCGCAATTGAAAGATATAACTGAAGAAATCAAAACAGTAAAAGCGGCGATAGAAGCA
AAGCCGCTTGCGGACAAAAAAACAGCGCTGGAAAGCGAACTTTCTTCTTACCCGGAAGCAGCGGAGCAATTCCCGAAGGA
CGGAATGCATCAGCTGGAAAAATACGAATCGCATCTCCATCCGAAAGCGGCCCGGCTTGAGGGGCTTCGGGCAAAAGCGG
CTGAAATCAAACGGCAGGCTGATCTGCTCTCTCCAAATGAGGACATGTTACAAAAAGAGCGGCAGCTGCAGGAGCTTTCC
GGCGAGCAGCATATGTACGAATCACGCGGCGAACAGCTTGCCGCCATCCAATCACAGATCCGGCAGACATCAGCCCGTGT
TTCTTCAGGATTACAGCAGCTCGGCAGACATGAGGAAGACGACATTCTTTCGCTGAACACCGATTATGAATATGAATGGC
AGCTGCAAGAAGCCGTTCAGAGCGCCGGACAGGCCAGAGAAAGAAAAACACAGCTCGACTCTCTATTTGAACAAGCGCGG
CTGGAGCTGGAAGACGCTGAACGAAAACATGCCGTGACGGCAGAAAACGTCTTGGAACCCGCTGTCAGAAAAGAAAAAGA
AGCCGCCTTACAAGCATATAAACAAACGGCTGATACTGAAGGAAACGAATGGCAGGCTCATCTCCGGCAGCTGGAAAAAC
AGCGCGCCAAACAAAAAAAGCTCTTTCTCGGTACGGGCATTCTGTTCATTGCGATTTTCGTTATGTTAAAGGAATGGCTG
CCCGCCGCCCTTTTTACCGGCGCTCTGATGCTGTACGTGCTGACTGGCATGCAAAAGGCGCTGCCGTCTGAAAGAAGCCG
GCCCGGTCACAAAAAGCAGAAGCCCCTGATCTCAAAAGAAGAGGCTGATCTTCTGCAGGAAGAGCTATGGCGTGACGGCC
AGCATCGGCAGCAGCTGATTGCGGATCAAGCGGTGCTTGAACAGAAAGAAGCGGCATATGAAAGAGTCATCCGCCAATAT
GAAGAATGGGAGGCCGAAATGGCGCCCTCTGAAAAAAAGACGGAACATTTTATGAAGGAACTGGGGTTTTCGGGCAGCCC
GTCCCATCTCCTCGACGCATATCATGTGATGAAAGATGTCAAAAAAGAAATCCTTACCAAGCATGAGCTGACCATTGAAG
CGGGGCGGCTGCAAAAACTGCAACGAGCATTTGAGGAACGGGTCAAAAAGCTGAGTCCTTCAGACGGCCGGGAGCTGTCC
GTAAAAGAAAGGCTGCACTTTTTGCTGCAGCAGGCAGAACGGGCCCGTGAAGATGCAAAACGAAAACAGGCGCTCGAAAC
AGACCTGCTGCATACCCAAGAGCAAATCCGTGAATTAAACGAAGAAGTTCATTACTACGAACAGCAGGTCAAACAGCTTT
TTACAGAGGCAGGGGCAAAAAACCGTGAACACTTTTGTGAACTTGGCAGGCTGAATGAAAGCCGCCGGGAAACAGAGAGG
AAGCTGTGCGAAATCAAAACGCACTTATCCGGCAAGGGCGGCAAACAGCTGGAGCCGTACATGAGCCGCACAGTGCCCGA
ACTTGAACATACAGCCGTTCAGAAAGAACAAGAGAAAGAAACACTTGAGGAAAAAATCGCCCATCTCCGTGAGCAGATCG
CTTTATTAACGGTGAAACAAGAACAGCTGGAGTCCTCGGGGCTGGTATCCGATTTAAAACAGCAGACAGAAATGCAGAAA
GAACGCGTTAAAAAAACAGCTAAAGAGTGGGCCGCATTGCAGACGGTCAGACACATCATCAGAGAAAAAATGGAGCGGCA
TAAAAAAGTCACGCTTCCCCGTCTGTTGGAAACCGCAGGTGCATTGTACGGACCGCTTACGGACGGACGCTATCAGAAAT
TGTATTTCTCTGAAGCTGATGACTCCATTATGGTCATGCAGAAAGACGGCACGGTTTTTTCTGCAAGCGAGCTGTCACAG
GCGGCATGCGAGCAGCTTTATGCGGCGATCCGTTTTGCCCTTGCATCAGAACGGGAATCTGCGGTATCACTTCCGTTTTT
ACTTGATGACAGTTTTGTTCATTTTGACAGGGAGCGGCTGCAGCGGCTGTTTGATGTGCTGAATCAGCTTTCAGAAGGCG
GCCGTCAGATTCTTTATTTCACCTGCCATGAGCATGTCAGCCGGTCATTTCACAGCGGGCAAGTCATGCGGCTCCTGTCA
TAA

Domains

Predicted by InterProScan.

AAA domain (AAA_27)

(1-200)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9P1JFQ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcE Bacillus subtilis subsp. subtilis str. 168

58.221

100

0.586