Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   GRB95_RS03835 Genome accession   NZ_CP051004
Coordinates   688392..689201 (+) Length   269 a.a.
NCBI ID   WP_001289498.1    Uniprot ID   X5KFV3
Organism   Streptococcus agalactiae 515     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 683392..694201
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GRB95_RS03810 (GRB95_03810) - 683721..684416 (-) 696 WP_000173642.1 amino acid ABC transporter permease -
  GRB95_RS03815 (GRB95_03815) - 684429..685229 (-) 801 WP_000946169.1 transporter substrate-binding domain-containing protein -
  GRB95_RS03820 (GRB95_03820) - 685241..685996 (-) 756 WP_000053155.1 amino acid ABC transporter ATP-binding protein -
  GRB95_RS03825 (GRB95_03825) vicR 686336..687046 (+) 711 WP_000722052.1 response regulator YycF Regulator
  GRB95_RS03830 (GRB95_03830) vicK 687039..688388 (+) 1350 WP_001065469.1 cell wall metabolism sensor histidine kinase VicK Regulator
  GRB95_RS03835 (GRB95_03835) vicX 688392..689201 (+) 810 WP_001289498.1 MBL fold metallo-hydrolase Regulator
  GRB95_RS03840 (GRB95_03840) - 689204..689572 (+) 369 WP_000719384.1 YbaN family protein -
  GRB95_RS03845 (GRB95_03845) rnc 689747..690433 (+) 687 WP_000661526.1 ribonuclease III -
  GRB95_RS03850 (GRB95_03850) smc 690441..693980 (+) 3540 WP_000478775.1 chromosome segregation protein SMC -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 30273.24 Da        Isoelectric Point: 6.2265

>NTDB_id=435900 GRB95_RS03835 WP_001289498.1 688392..689201(+) (vicX) [Streptococcus agalactiae 515]
MSEIGFKYSILASGSTGNCFYIETPQKRLLIDAGLTGKKVTSLLAEINRKPEDLDAILVTHEHSDHIKGVGVLARKYHLD
IYANEQTWKVMDERNMLGKVDVSQKHVFGRGKTLTFGDLDIESFGVSHDAVDPQFYRMMKDDKSFVMLTDTGYVSDRMAS
LIENADGYLIESNHDIEILRSGSYPWTLKQRILSDKGHLSNEDGSETMIRTIGNRTKHIYLGHLSKENNIKELAHMTMEN
NLMRADFGVGTDFSVHDTSPDSATPLTRI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=435900 GRB95_RS03835 WP_001289498.1 688392..689201(+) (vicX) [Streptococcus agalactiae 515]
ATGTCAGAAATAGGATTTAAATATAGTATCTTAGCTTCAGGTTCAACTGGAAATTGTTTTTATATTGAGACACCCCAAAA
ACGTCTTTTAATTGACGCTGGTTTAACAGGCAAGAAAGTGACTAGCCTCCTTGCAGAAATTAATCGTAAACCAGAAGATT
TAGATGCTATACTAGTTACCCACGAACATTCTGACCACATTAAAGGTGTTGGCGTATTGGCTAGGAAATATCACCTTGAT
ATTTATGCCAATGAGCAGACGTGGAAAGTTATGGATGAGCGTAACATGTTAGGCAAAGTTGATGTTAGTCAAAAGCATGT
TTTTGGACGCGGTAAAACCTTAACTTTCGGGGATTTAGATATTGAGAGCTTTGGTGTAAGTCATGATGCTGTGGATCCCC
AATTTTACCGTATGATGAAAGATGATAAGAGCTTTGTGATGTTGACAGATACAGGATATGTTAGCGACCGAATGGCAAGT
TTGATTGAGAATGCAGATGGTTATTTGATCGAGTCAAATCACGACATTGAGATTCTACGTTCGGGTTCTTATCCTTGGAC
ACTTAAGCAACGTATTTTATCAGATAAAGGACATTTATCTAATGAAGATGGTTCAGAAACCATGATTCGCACTATAGGTA
ACCGTACTAAACACATCTATTTAGGACACTTGAGTAAGGAAAATAATATTAAGGAACTTGCTCACATGACTATGGAAAAC
AATTTAATGAGAGCTGACTTTGGTGTGGGCACAGATTTTTCTGTTCACGATACTTCACCTGATTCAGCTACCCCACTGAC
GAGGATTTAA

Domains

Predicted by InterproScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(28-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB X5KFV3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

76.58

100

0.766