Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   IL989_RS03720 Genome accession   NZ_CP062984
Coordinates   749167..749883 (+) Length   238 a.a.
NCBI ID   WP_193351431.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain PP19 isolate PP19     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 744167..754883
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IL989_RS03690 (IL989_03690) - 744346..744723 (+) 378 WP_193351902.1 DUF1992 domain-containing protein -
  IL989_RS03695 (IL989_03695) - 744733..745164 (-) 432 WP_071348533.1 Hsp20/alpha crystallin family protein -
  IL989_RS03700 (IL989_03700) - 745180..745422 (-) 243 WP_013351373.1 spore germination protein -
  IL989_RS03705 (IL989_03705) - 745437..745697 (-) 261 WP_007408496.1 spore germination protein -
  IL989_RS03710 (IL989_03710) treP 745967..747382 (+) 1416 WP_193351429.1 PTS system trehalose-specific EIIBC component -
  IL989_RS03715 (IL989_03715) treC 747458..749143 (+) 1686 WP_193351430.1 alpha,alpha-phosphotrehalase -
  IL989_RS03720 (IL989_03720) treR 749167..749883 (+) 717 WP_193351431.1 trehalose operon repressor Regulator
  IL989_RS03725 (IL989_03725) - 750016..750681 (+) 666 WP_065980936.1 NAD(P)H-dependent oxidoreductase -
  IL989_RS03730 (IL989_03730) - 750717..751481 (-) 765 WP_065521574.1 YibE/F family protein -
  IL989_RS03735 (IL989_03735) - 751478..752617 (-) 1140 WP_193351432.1 YibE/F family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27470.57 Da        Isoelectric Point: 7.3799

>NTDB_id=435893 IL989_RS03720 WP_193351431.1 749167..749883(+) (treR) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
MKVNKYITIYKDMVQQIESGMRKAEDVLPSENDLCDQYGTSRETVRKALNMLAQNGYIQKIKGKGSVILDREKMRFPVSG
LISFKELSETLGKETKTTVHRLGLIPPPAEAAKELGTKADEKVWEVVRSRRIDGEHIILDKDYFVKKHVPLLTKAICEDS
IYEYLEEELGLSISYAQKEIVVEPAGEEDRKYLDLGGFSHMAVVKNRVFLEDTSLFQYTESRHRLDKFRFVDFARREK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=435893 IL989_RS03720 WP_193351431.1 749167..749883(+) (treR) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
ATGAAAGTGAATAAATACATCACAATCTATAAAGACATGGTGCAGCAAATCGAAAGCGGCATGCGGAAGGCGGAAGACGT
TCTTCCGTCTGAAAATGATTTGTGCGATCAATACGGCACATCAAGAGAAACCGTCCGCAAAGCGCTCAATATGCTGGCGC
AAAACGGCTACATCCAGAAAATCAAAGGCAAAGGCTCCGTCATATTAGACAGAGAAAAAATGCGTTTTCCCGTCTCAGGC
TTGATCAGCTTCAAGGAGCTTTCGGAAACGCTCGGAAAAGAGACGAAAACGACGGTTCACCGTCTCGGGCTGATTCCGCC
TCCCGCCGAAGCTGCAAAAGAGCTTGGCACAAAGGCGGATGAAAAGGTGTGGGAAGTCGTCAGATCAAGGCGGATTGACG
GAGAACACATTATTTTGGACAAGGATTACTTTGTGAAAAAGCATGTTCCTCTTTTGACGAAGGCGATTTGCGAAGATTCG
ATTTACGAGTATCTCGAAGAAGAGCTCGGCCTGTCAATCAGCTACGCGCAAAAAGAAATTGTCGTGGAGCCGGCAGGGGA
AGAAGACCGAAAGTATTTGGATCTCGGCGGATTCAGCCATATGGCGGTCGTGAAAAACCGTGTGTTTTTGGAGGATACCA
GCCTCTTTCAATATACGGAAAGCCGGCACAGGCTCGATAAATTTCGTTTCGTCGACTTTGCGAGAAGAGAAAAATAA

Domains

Predicted by InterProScan.

UTRA domain (UTRA)

(91-229)

Bacterial regulatory proteins, gntR family (GntR)

(6-68)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

42.797

99.16

0.424