Detailed information NTG0435889

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: IL989_RS02485
• Genome accession: NZ_CP062984
• Coordinates: 479892..481067 (+)
• Length: 391 a.a.
• NCBI ID: WP_193351331.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain PP19 isolate PP19
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 474892..486067

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IL989_RS02425 (IL989_02425)	cmpA	476436..476549 (-)	114	WP_003156164.1	cortex morphogenetic protein CmpA	-
IL989_RS02430 (IL989_02430)	-	476649..477098 (+)	450	WP_065982845.1	SprT family protein	-
IL989_RS02470 (IL989_02470)	-	478063..478423 (+)	361	Protein_445	cystatin-like fold lipoprotein	-
IL989_RS02475 (IL989_02475)	-	478586..479005 (+)	420	WP_193351329.1	hypothetical protein	-
IL989_RS02480 (IL989_02480)	-	479028..479537 (-)	510	WP_193351330.1	DUF4367 domain-containing protein	-
IL989_RS02485 (IL989_02485)	rapC	479892..481067 (+)	1176	WP_193351331.1	Rap family tetratricopeptide repeat protein	Regulator
IL989_RS02490 (IL989_02490)	-	481197..482504 (-)	1308	WP_193351332.1	serine/threonine-protein kinase	-
IL989_RS02495 (IL989_02495)	-	482733..483191 (-)	459	WP_193351333.1	SMI1/KNR4 family protein	-
IL989_RS02500 (IL989_02500)	-	483200..483718 (-)	519	WP_193351334.1	hypothetical protein	-
IL989_RS02505 (IL989_02505)	-	483730..485447 (-)	1718	Protein_452	ribonuclease YeeF family protein	-

Sequence

Protein

• Length: 391 a.a.
• Molecular weight: 46488.94 Da
• Isoelectric Point: 4.8271

>NTDB_id=435889 IL989_RS02485 WP_193351331.1 479892..481067(+) (rapC) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
MQQGFLKRSKIPYDLVTKKLNAWYMAIKSDLVDEAERIKVEAEAELVNMEKNQDALLYYQLLEFRHEIMLSYMKSKNMDS
LENAYETLREIESQGQLTGMLEYYFYFFMGMYEFRRKELTTAISAYRIAEKKLFEVEDEIERAEFFFKVSHVYYYMKQTY
FSLNYANRALKIFKQYDAYAVQTIRCQNIIAGNLIDSLDYERALDVFRDTLRISESIGADYLIGMSQMNIGICYDYIGEY
DKASEYLQTSLEFFEKTEHIFVTKTLFNIVNVKTKQKALTEALPYLKKGQSVAKKYRDSEYDAKFKIIEGLYFTDDEYSL
IEEAFSYLNEKRMFGDIENFAIRVADYFYEKGDLSRSNEYYRLSIEARRKIKKGEIINEDQSDFVYSDIIS

Nucleotide

• Length: 1176 bp

>NTDB_id=435889 IL989_RS02485 WP_193351331.1 479892..481067(+) (rapC) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
TTGCAGCAGGGTTTTTTAAAGAGAAGCAAAATTCCATATGATTTGGTGACAAAAAAACTAAATGCTTGGTACATGGCTAT
AAAAAGTGATTTGGTTGATGAAGCAGAAAGAATTAAAGTGGAAGCTGAAGCTGAACTAGTTAATATGGAAAAAAATCAAG
ATGCTCTATTATATTATCAGCTGCTAGAATTCAGACATGAAATCATGTTGAGCTATATGAAGTCAAAGAATATGGATAGC
TTGGAAAATGCATATGAGACTCTTAGGGAAATTGAATCCCAAGGTCAATTAACCGGTATGTTGGAGTATTATTTTTATTT
CTTTATGGGTATGTATGAATTTAGAAGAAAAGAGCTGACTACAGCAATAAGTGCTTATCGAATCGCGGAGAAAAAGTTAT
TTGAGGTGGAAGACGAAATTGAAAGGGCGGAGTTCTTTTTTAAAGTCTCCCATGTATATTACTACATGAAGCAGACTTAT
TTCTCTTTAAATTATGCCAATCGGGCACTTAAAATTTTCAAACAGTACGATGCGTATGCAGTTCAAACCATAAGATGTCA
AAATATAATTGCGGGTAATTTAATTGACTCTTTGGATTATGAAAGAGCACTAGATGTGTTTAGAGACACATTGCGTATAT
CTGAATCAATTGGGGCGGATTACTTAATTGGTATGTCTCAAATGAATATTGGTATTTGTTATGATTACATAGGTGAATAT
GATAAAGCCTCTGAATATTTACAAACCTCATTAGAGTTTTTTGAAAAGACTGAACATATATTTGTGACGAAAACATTGTT
CAATATAGTAAACGTTAAAACAAAACAGAAGGCACTGACTGAAGCCTTACCTTATTTAAAAAAAGGGCAATCTGTCGCAA
AGAAATACAGGGATTCAGAATATGATGCAAAATTCAAGATCATAGAAGGACTTTATTTTACTGATGATGAATATTCTTTA
ATTGAAGAGGCCTTTTCGTACCTGAATGAAAAAAGAATGTTCGGAGACATTGAAAATTTTGCAATCAGAGTAGCGGATTA
TTTTTATGAAAAAGGGGATTTATCACGTTCCAATGAATATTATCGACTGAGTATTGAAGCGAGACGAAAAATAAAAAAAG
GGGAGATAATTAATGAAGATCAGTCGGACTTTGTTTACAGTGATATTATTAGCTAG

Domains

Predicted by InterProScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (10-70)

• Tetratricopeptide repeat (TPR_12) (199-256)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	37.203	96.931	0.361