Detailed information NTG0435877

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: IL989_RS01480
• Genome accession: NZ_CP062984
• Coordinates: 268995..270116 (+)
• Length: 373 a.a.
• NCBI ID: WP_193351252.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain PP19 isolate PP19
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 263995..275116

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IL989_RS01460 (IL989_01460)	-	264316..265311 (-)	996	WP_193351249.1	DUF5105 domain-containing protein	-
IL989_RS01465 (IL989_01465)	-	265429..266826 (+)	1398	WP_193351893.1	YcdB/YcdC domain-containing protein	-
IL989_RS01470 (IL989_01470)	-	267027..268385 (+)	1359	WP_193351250.1	YcdB/YcdC domain-containing protein	-
IL989_RS01475 (IL989_01475)	-	268382..268885 (-)	504	WP_193351251.1	M15 family metallopeptidase	-
IL989_RS01480 (IL989_01480)	rapF	268995..270116 (+)	1122	WP_193351252.1	tetratricopeptide repeat protein	Regulator
IL989_RS01485 (IL989_01485)	-	270230..271009 (+)	780	WP_193351253.1	glucose 1-dehydrogenase	-
IL989_RS01490 (IL989_01490)	-	271093..272772 (+)	1680	WP_193351254.1	alpha-glucosidase	-
IL989_RS01495 (IL989_01495)	-	272966..273925 (+)	960	WP_013350924.1	metal ABC transporter substrate-binding protein	-
IL989_RS01500 (IL989_01500)	-	273980..274675 (+)	696	WP_014469701.1	metal ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 373 a.a.
• Molecular weight: 44377.48 Da
• Isoelectric Point: 5.0035

>NTDB_id=435877 IL989_RS01480 WP_193351252.1 268995..270116(+) (rapF) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
MKSKIPSEEVAVKMNEWYKLIRAFEADKAEALKREIQYELEDMEENQDLLLYFSLMEFRHRIMLDKLKPMKDGDCQPPFS
EMLTEIEMNQQKLTGLLEYYFYYFRGMYEFKQKNFISAISHYKRAEEKLEYVEDDIEKAEFLYKISEVYYHIKQTFFSMN
YAGQALDIYKKYELYGMRRVQCKFIIAGNLMDAQQHEKALEYLECALEHAERLDDHYMIAAAYYNIGHCMYSLGDFCKAA
EDFERAAAGFEAHSFQQVIQAVFSLTHIYFKTERYSDAAASYARGMKSAAEWEDEIYMTKFRLIKELYQGDGGQDSLKEY
FDILESKELLADTEELLQDAAHFFHKRENYKAASYFFSRLVSVQKRLQMNNYA

Nucleotide

• Length: 1122 bp

>NTDB_id=435877 IL989_RS01480 WP_193351252.1 268995..270116(+) (rapF) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
ATGAAATCCAAGATTCCATCTGAAGAAGTAGCCGTAAAGATGAATGAATGGTATAAGCTGATCCGCGCGTTTGAAGCCGA
TAAAGCTGAAGCGCTGAAGCGGGAGATTCAATATGAACTCGAAGATATGGAAGAAAATCAGGATTTATTATTGTATTTTT
CATTGATGGAATTTAGGCATCGCATCATGCTGGATAAATTAAAACCCATGAAAGACGGCGACTGCCAGCCTCCGTTCTCT
GAAATGCTCACTGAGATTGAGATGAACCAGCAAAAGCTGACCGGCTTACTGGAATATTATTTTTACTATTTCAGGGGAAT
GTATGAATTTAAGCAGAAAAACTTCATCTCAGCGATTTCTCATTATAAACGGGCTGAGGAAAAACTAGAATATGTGGAAG
ATGACATAGAGAAAGCCGAGTTTCTGTATAAAATTTCTGAAGTGTACTATCATATCAAGCAGACTTTCTTTTCGATGAAT
TACGCGGGACAGGCGCTTGATATTTACAAGAAATATGAATTATACGGAATGAGAAGGGTGCAGTGCAAATTTATCATTGC
CGGTAATCTGATGGACGCCCAGCAGCATGAAAAAGCGCTGGAATACCTTGAATGCGCCTTGGAGCACGCGGAGCGGCTTG
ATGATCACTATATGATTGCTGCGGCCTATTATAATATCGGGCACTGTATGTACAGTTTGGGTGACTTTTGCAAGGCGGCG
GAAGACTTTGAACGAGCGGCTGCCGGTTTTGAAGCGCACAGCTTCCAGCAGGTCATCCAGGCTGTTTTTTCACTCACGCA
TATCTACTTTAAAACGGAAAGATACAGTGACGCCGCCGCCAGCTACGCGCGGGGCATGAAAAGCGCGGCGGAGTGGGAAG
ACGAGATCTATATGACAAAATTCCGTCTGATTAAGGAGCTTTATCAGGGTGACGGCGGACAGGATTCGCTCAAAGAGTAT
TTTGACATTCTGGAATCAAAGGAACTGTTGGCTGACACTGAGGAACTGCTTCAGGACGCGGCTCATTTCTTTCATAAACG
GGAGAACTACAAAGCGGCATCTTATTTTTTCAGCAGGCTTGTCAGCGTGCAAAAAAGGCTGCAAATGAACAATTACGCAT
AA

Domains

Predicted by InterProScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

• Tetratricopeptide repeat (TPR_12) (187-251)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	42.588	99.464	0.424
rapC	Bacillus subtilis subsp. subtilis str. 168	40.323	99.732	0.402