Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   IMO23_RS14770 Genome accession   NZ_CP062919
Coordinates   3060871..3061233 (-) Length   120 a.a.
NCBI ID   WP_000101096.1    Uniprot ID   A0ABN3ANQ3
Organism   Acinetobacter baumannii strain Res13-Abat-PEA21-P4-01-A     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3055871..3066233
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMO23_RS14745 (IMO23_14745) - 3056499..3056642 (+) 144 WP_001984826.1 entericidin A/B family lipoprotein -
  IMO23_RS14750 (IMO23_14750) dapE 3056768..3057901 (+) 1134 WP_001016580.1 succinyl-diaminopimelate desuccinylase -
  IMO23_RS14755 (IMO23_14755) - 3058039..3058236 (-) 198 Protein_2893 alpha/beta hydrolase -
  IMO23_RS14760 (IMO23_14760) - 3058203..3060227 (-) 2025 WP_017725536.1 methyl-accepting chemotaxis protein -
  IMO23_RS14765 (IMO23_14765) - 3060274..3060810 (-) 537 WP_000729762.1 chemotaxis protein CheW -
  IMO23_RS14770 (IMO23_14770) pilH 3060871..3061233 (-) 363 WP_000101096.1 PleD family two-component system response regulator Machinery gene
  IMO23_RS14775 (IMO23_14775) pilG 3061257..3061640 (-) 384 WP_000389061.1 twitching motility response regulator PilG Regulator
  IMO23_RS14780 (IMO23_14780) - 3061924..3062562 (+) 639 WP_005134798.1 hypothetical protein -
  IMO23_RS14785 (IMO23_14785) - 3062622..3063740 (+) 1119 WP_005134795.1 efflux RND transporter periplasmic adaptor subunit -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13479.47 Da        Isoelectric Point: 4.9102

>NTDB_id=435844 IMO23_RS14770 WP_000101096.1 3060871..3061233(-) (pilH) [Acinetobacter baumannii strain Res13-Abat-PEA21-P4-01-A]
MARILIVDDSPTETFRFKEILTKHGYDVLEASNGADGVTLAKAEQPDLVLMDVVMPGVNGFQATRQITRDEDTKHIPVVI
VSTKDQATDRVWGKRQGAIDYLIKPIEEKQLIDVIKQFLN

Nucleotide


Download         Length: 363 bp        

>NTDB_id=435844 IMO23_RS14770 WP_000101096.1 3060871..3061233(-) (pilH) [Acinetobacter baumannii strain Res13-Abat-PEA21-P4-01-A]
ATGGCACGTATTCTCATTGTTGATGACTCACCAACAGAAACTTTTCGTTTTAAAGAAATCCTAACTAAGCATGGCTATGA
CGTACTTGAAGCATCTAACGGTGCAGATGGTGTGACTTTGGCAAAAGCTGAGCAGCCTGACTTGGTATTAATGGATGTGG
TCATGCCAGGTGTAAATGGTTTTCAGGCAACGCGCCAGATTACCCGTGATGAAGACACGAAGCATATTCCAGTGGTGATT
GTGAGTACTAAAGATCAGGCAACTGACCGAGTATGGGGTAAACGTCAAGGCGCAATCGATTACTTAATCAAGCCAATCGA
AGAAAAGCAATTAATTGATGTAATTAAACAATTTCTAAATTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

39.496

99.167

0.392