Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FOB44_RS17440 Genome accession   NZ_CP050995
Coordinates   3954632..3955981 (-) Length   449 a.a.
NCBI ID   WP_050022194.1    Uniprot ID   A0A0G3M4R7
Organism   Chryseobacterium gallinarum strain FDAARGOS_636     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3949632..3960981
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOB44_RS19260 - 3949952..3950086 (-) 135 WP_262483571.1 hypothetical protein -
  FOB44_RS17420 (FOB44_17425) - 3950335..3952722 (-) 2388 WP_168239311.1 M1 family metallopeptidase -
  FOB44_RS17425 (FOB44_17430) - 3952789..3953367 (-) 579 WP_050022196.1 HupE/UreJ family protein -
  FOB44_RS17430 (FOB44_17435) - 3953428..3953940 (+) 513 WP_228460420.1 DUF6702 family protein -
  FOB44_RS17435 (FOB44_17440) - 3953948..3954547 (-) 600 WP_168239312.1 ACP phosphodiesterase -
  FOB44_RS17440 (FOB44_17445) radA 3954632..3955981 (-) 1350 WP_050022194.1 DNA repair protein RadA Machinery gene
  FOB44_RS17445 (FOB44_17450) - 3956124..3956693 (+) 570 WP_053327247.1 YceI family protein -
  FOB44_RS17450 (FOB44_17455) - 3956914..3958521 (+) 1608 WP_050022192.1 CTP synthase -
  FOB44_RS17455 (FOB44_17460) yidC 3958700..3960499 (+) 1800 WP_168239313.1 membrane protein insertase YidC -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 49883.45 Da        Isoelectric Point: 6.6946

>NTDB_id=435825 FOB44_RS17440 WP_050022194.1 3954632..3955981(-) (radA) [Chryseobacterium gallinarum strain FDAARGOS_636]
MAKLKTAYFCQNCGTQYPQWMGQCKNCGQWNTLVEEVVEKPSHSAPPFSKSKQHVINIIEVETSEEPRIKTPSEELNRVL
GGGIVLGSVTLIGGEPGIGKSTLLLQLALKMKKKIFYVSGEESASQIKMRADRLTDVKNPNCFLFTETSLEKILHEAKKL
EPDFVIIDSIQTLQSQLIESSPGTVSQIRECSNEIIKYAKENNVPVFLVGHITKDGQIAGPKVLEHMVDVVLNFDGDRNH
LFRLLRANKNRFGSTSEIGIYEMISQGLKEIKNPSEILITKKFEELSGNSVAVTLEGNRPMLLEIQALVSTAVYGTPQRS
STGFDSKRLNMLLAVLEKRAGFQLGAKDVFLNITGGIKTDDPALDLAVVASILSSNEDIAISEHYCFAGEIGLSGEIRPV
AQIEQRITEAEKLGYEKIFVSNLNKIPKRKFGIRIEEVSKVEDFHERLF

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=435825 FOB44_RS17440 WP_050022194.1 3954632..3955981(-) (radA) [Chryseobacterium gallinarum strain FDAARGOS_636]
ATGGCAAAACTGAAAACAGCATATTTCTGTCAAAACTGCGGAACCCAGTATCCCCAATGGATGGGACAATGTAAAAATTG
CGGACAATGGAATACTTTAGTTGAGGAGGTGGTGGAAAAACCTTCACACAGCGCACCTCCTTTCTCGAAGTCCAAGCAAC
ATGTCATCAACATTATTGAGGTTGAAACCAGTGAAGAACCCAGAATAAAAACACCTTCCGAAGAACTTAACCGCGTCCTG
GGCGGTGGTATTGTTTTAGGCTCTGTTACCCTGATTGGCGGTGAGCCCGGTATTGGGAAATCAACACTGCTGCTTCAGCT
TGCCCTGAAAATGAAGAAAAAAATCTTCTATGTCTCCGGCGAGGAAAGTGCTTCTCAGATCAAAATGAGGGCAGATCGCT
TAACGGATGTTAAAAATCCCAATTGCTTTCTCTTTACCGAAACTTCATTGGAAAAAATCCTTCATGAAGCCAAAAAGCTG
GAGCCGGATTTTGTGATCATCGATTCTATACAAACCCTCCAATCCCAGCTTATTGAAAGCTCTCCCGGAACTGTTTCCCA
AATCAGGGAATGCTCCAATGAGATTATCAAATACGCTAAAGAAAACAATGTCCCCGTTTTCCTGGTAGGCCACATTACTA
AAGATGGCCAGATTGCCGGCCCCAAAGTACTGGAACATATGGTGGATGTGGTTTTGAATTTCGATGGAGACAGAAACCAT
CTTTTCAGATTGCTGAGAGCCAATAAAAACAGATTCGGCTCCACTTCTGAAATCGGAATTTATGAAATGATTTCCCAGGG
GCTGAAGGAAATTAAAAACCCTTCGGAAATCCTTATCACCAAAAAATTTGAAGAACTTTCCGGAAATTCAGTAGCGGTCA
CCCTTGAAGGAAACAGGCCTATGCTTCTGGAAATTCAGGCGTTGGTAAGCACCGCCGTATACGGAACTCCACAAAGAAGC
TCTACAGGATTTGACTCTAAAAGATTAAACATGCTTCTTGCCGTACTGGAAAAAAGGGCAGGTTTTCAACTGGGAGCCAA
AGACGTTTTCCTTAATATTACAGGAGGAATCAAAACAGATGATCCGGCATTGGACCTCGCAGTAGTAGCTTCCATCCTTT
CTTCCAATGAAGATATTGCCATTTCCGAGCATTACTGCTTCGCCGGTGAAATTGGATTAAGCGGGGAAATCCGCCCGGTT
GCACAGATTGAACAAAGAATCACGGAAGCTGAAAAGCTCGGTTATGAAAAAATATTCGTTTCCAACCTCAACAAAATCCC
GAAAAGGAAATTTGGAATCAGGATTGAAGAAGTCAGTAAAGTAGAAGATTTCCATGAGAGACTTTTTTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(65-217)

Subunit ChlI of Mg-chelatase (ChlI)

(338-423)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0G3M4R7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.221

100

0.506
  radA Streptococcus pneumoniae Rx1

50.355

94.209

0.474
  radA Streptococcus pneumoniae D39

50.355

94.209

0.474
  radA Streptococcus pneumoniae R6

50.355

94.209

0.474
  radA Streptococcus pneumoniae TIGR4

50.355

94.209

0.474
  radA Streptococcus mitis SK321

50.355

94.209

0.474
  radA Streptococcus mitis NCTC 12261

50.355

94.209

0.474