Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   FOB44_RS13475 Genome accession   NZ_CP050995
Coordinates   3098954..3100063 (+) Length   369 a.a.
NCBI ID   WP_168238822.1    Uniprot ID   -
Organism   Chryseobacterium gallinarum strain FDAARGOS_636     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3093954..3105063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOB44_RS13465 (FOB44_13470) - 3096979..3097908 (-) 930 WP_168238820.1 DUF3078 domain-containing protein -
  FOB44_RS13470 (FOB44_13475) - 3098153..3098920 (+) 768 WP_168238821.1 rhomboid family intramembrane serine protease -
  FOB44_RS13475 (FOB44_13480) dprA 3098954..3100063 (+) 1110 WP_168238822.1 DNA-processing protein DprA Machinery gene
  FOB44_RS13480 (FOB44_13485) gdhA 3100254..3101612 (+) 1359 WP_050021659.1 NADP-specific glutamate dehydrogenase -
  FOB44_RS13485 (FOB44_13490) - 3101742..3102110 (+) 369 WP_168238823.1 iron chaperone -
  FOB44_RS13490 (FOB44_13495) - 3102143..3102457 (-) 315 WP_053327722.1 hypothetical protein -
  FOB44_RS13495 (FOB44_13500) - 3102657..3103145 (-) 489 WP_050021662.1 YkgJ family cysteine cluster protein -
  FOB44_RS13500 (FOB44_13505) - 3103149..3104117 (-) 969 WP_168238824.1 ion channel -
  FOB44_RS13505 (FOB44_13510) - 3104266..3104646 (+) 381 WP_053327720.1 group III truncated hemoglobin -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 41745.82 Da        Isoelectric Point: 8.5325

>NTDB_id=435821 FOB44_RS13475 WP_168238822.1 3098954..3100063(+) (dprA) [Chryseobacterium gallinarum strain FDAARGOS_636]
MISEEYFYAIALRECSQIGDINFYKLVRTFGSAQEAWKRAKKEYRKIEGLGQKTVADIGNKEHLTFAEKELKYCEKNNIR
ITIRHLNELPALLNECADAPAILYQKGNYENSTPKISIVGTRNMTTYGRQFIENFFETAQSSRFISVSGLALGIDKEVHE
KSIQYRKPTIAVLAHGFQFLYPAKNRKLSERILQEGGCLITEFSSSRKPDRENFIQRNRIVAGISPSTIVVETGFGGGSV
STAAFANDYNRDVFALPGKITDPYSQGCNQLIFHNKAIAISTIKDLVNMLGFNHPKEKIEELFPYQEISVQLTENQNIIY
KIIKENPQITLDDLSQEAAVSSYKILPIILELELLGKVKSFSGRQFMAI

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=435821 FOB44_RS13475 WP_168238822.1 3098954..3100063(+) (dprA) [Chryseobacterium gallinarum strain FDAARGOS_636]
ATGATTTCCGAAGAATACTTTTATGCCATCGCCCTCCGCGAATGCAGTCAAATTGGTGATATTAACTTTTATAAACTTGT
CCGGACCTTTGGAAGTGCCCAGGAAGCATGGAAAAGAGCAAAGAAAGAATACAGGAAAATAGAAGGGTTAGGCCAAAAGA
CAGTGGCAGATATTGGAAATAAGGAACATCTGACCTTTGCCGAAAAAGAGCTGAAGTATTGTGAAAAAAATAATATCCGG
ATTACGATACGACACCTTAATGAACTTCCGGCTCTTCTTAATGAATGTGCAGATGCCCCTGCCATACTTTATCAAAAAGG
AAATTATGAAAATTCAACACCCAAAATAAGTATTGTAGGAACCCGGAATATGACCACCTATGGCAGGCAATTCATTGAAA
ATTTTTTTGAGACTGCTCAATCTTCCCGGTTTATATCAGTAAGCGGTCTCGCTTTAGGTATTGATAAAGAGGTCCATGAA
AAATCCATACAATACCGGAAACCCACAATAGCAGTTCTCGCCCACGGTTTTCAGTTTTTATATCCTGCCAAAAACAGGAA
ATTATCTGAACGGATCCTTCAGGAGGGAGGCTGCCTTATTACAGAATTCAGTTCTTCCCGGAAACCCGACCGGGAAAACT
TTATCCAGAGAAACAGAATTGTTGCGGGAATTTCCCCTTCAACAATTGTAGTGGAAACCGGATTCGGGGGAGGCTCCGTA
AGTACAGCTGCCTTTGCCAACGATTACAATCGTGACGTTTTTGCCCTTCCCGGAAAAATCACAGATCCTTATAGCCAGGG
GTGCAATCAACTGATTTTCCATAACAAAGCGATTGCTATTTCTACGATTAAAGACCTTGTCAACATGCTTGGTTTCAATC
ATCCTAAAGAGAAAATCGAGGAACTGTTCCCTTATCAGGAAATTTCAGTACAGTTAACTGAAAATCAGAATATAATCTAT
AAAATTATAAAAGAAAATCCCCAAATCACTTTAGATGATCTTTCACAGGAAGCAGCTGTTTCTTCGTACAAAATTTTACC
GATAATTTTAGAATTGGAGCTTTTAGGGAAAGTAAAATCATTTTCCGGGAGACAATTTATGGCAATTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-277)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Riemerella anatipestifer ATCC 11845 = DSM 15868

52.044

99.458

0.518