Detailed information NTG0435809

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: FOB43_RS17735
• Genome accession: NZ_CP050992
• Coordinates: 3670155..3671516 (+)
• Length: 453 a.a.
• NCBI ID: WP_081572669.1
• Uniprot ID: -
• Organism: Chromobacterium violaceum strain FDAARGOS_635
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 3665155..3676516

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FOB43_RS17700 (FOB43_17700)	-	3665281..3665424 (+)	144	WP_168228197.1	hypothetical protein	-
FOB43_RS17710 (FOB43_17710)	hpnC	3665716..3666528 (+)	813	WP_168228198.1	squalene synthase HpnC	-
FOB43_RS17715 (FOB43_17715)	hpnD	3666599..3667444 (+)	846	WP_168228199.1	presqualene diphosphate synthase HpnD	-
FOB43_RS17720 (FOB43_17720)	hpnE	3667441..3668712 (+)	1272	WP_168228200.1	hydroxysqualene dehydroxylase HpnE	-
FOB43_RS17725 (FOB43_17725)	-	3668709..3669470 (+)	762	WP_080762286.1	SDR family oxidoreductase	-
FOB43_RS17730 (FOB43_17730)	-	3669485..3670018 (+)	534	WP_043615315.1	hypothetical protein	-
FOB43_RS17735 (FOB43_17735)	radA	3670155..3671516 (+)	1362	WP_081572669.1	DNA repair protein RadA	Machinery gene
FOB43_RS17740 (FOB43_17740)	-	3671520..3672083 (+)	564	WP_168228201.1	sigma-70 family RNA polymerase sigma factor	-
FOB43_RS17745 (FOB43_17745)	-	3672080..3672277 (+)	198	WP_081543268.1	zf-HC2 domain-containing protein	-
FOB43_RS17750 (FOB43_17750)	-	3672341..3673246 (+)	906	WP_139791251.1	hypothetical protein	-
FOB43_RS17755 (FOB43_17755)	-	3673292..3673645 (-)	354	WP_011136517.1	DUF2325 domain-containing protein	-
FOB43_RS23095	-	3673779..3673904 (+)	126	WP_254894010.1	hypothetical protein	-
FOB43_RS17760 (FOB43_17760)	-	3673901..3674692 (+)	792	WP_011136516.1	cystine ABC transporter substrate-binding protein	-
FOB43_RS17765 (FOB43_17765)	-	3674721..3675689 (-)	969	WP_168228202.1	hypothetical protein	-

Sequence

Protein

• Length: 453 a.a.
• Molecular weight: 48759.09 Da
• Isoelectric Point: 7.0438

>NTDB_id=435809 FOB43_RS17735 WP_081572669.1 3670155..3671516(+) (radA) [Chromobacterium violaceum strain FDAARGOS_635]
MAKNKTVFSCTECGGQSPKWQGQCPHCSAWNTLVEAVAAPAAASPRFQSWAANVTKVQKLSEVQTEETPRDPSGIDELDR
VLGGGIVRGAVVLIGGDPGIGKSTLLLQALSQIGRSRKVLYVSGEESAQQIALRASRLALDTSSVALLAEICIENILETL
KREQPEVVVIDSIQTLYTEQVTSAPGSVSQVRECAAQLTRMAKQSGITVLLVGHVTKEGSLAGPRVLEHMVDTVLYFEGD
SHSSYRMIRAIKNRFGAVNELGVFAMTDRGLKGVSNPSAIFLSSYRDDVAGSCVLVTQEGTRPLLVEIQALVDDCHGFQP
KRLTVGLEQNRLSMLLAVLHRHGGVACFDQDVFLNAVGGVKINEPAADLAIILAMVSSLRNKALPEKLVVFGEVGLAGEV
RPVTRGQERLKEAAKLGFTRAIVPTANKPRQEIEGLKVLAVDRLDQAVEYCRE

Nucleotide

• Length: 1362 bp

>NTDB_id=435809 FOB43_RS17735 WP_081572669.1 3670155..3671516(+) (radA) [Chromobacterium violaceum strain FDAARGOS_635]
ATGGCCAAGAACAAAACCGTATTCAGCTGCACCGAGTGCGGCGGACAGTCGCCCAAGTGGCAGGGCCAGTGCCCGCACTG
CAGCGCCTGGAACACGCTGGTGGAGGCGGTGGCCGCGCCGGCCGCCGCCAGTCCCCGCTTCCAGTCCTGGGCGGCCAACG
TCACCAAGGTGCAGAAACTGTCCGAGGTGCAGACCGAGGAAACCCCGCGCGATCCGTCCGGCATCGACGAACTGGACCGC
GTGCTGGGCGGCGGCATCGTGCGCGGCGCCGTGGTGCTGATCGGCGGCGACCCGGGCATCGGCAAGTCCACGCTGCTGCT
GCAGGCCTTGTCTCAGATCGGCCGCAGCCGCAAGGTGCTCTACGTCTCCGGCGAGGAATCGGCGCAGCAGATCGCCTTGC
GCGCCTCGCGGCTGGCGCTGGATACCAGCAGCGTCGCTCTGCTGGCCGAGATCTGCATCGAGAACATTCTGGAAACGCTG
AAGCGAGAGCAGCCGGAAGTGGTGGTGATCGACTCGATCCAGACGCTTTACACCGAGCAGGTGACGTCGGCGCCGGGCTC
GGTGTCGCAGGTGCGCGAGTGCGCGGCGCAGCTGACGCGGATGGCCAAGCAGAGCGGCATCACCGTGCTGCTGGTCGGCC
ACGTGACCAAGGAAGGTTCGCTGGCCGGTCCGCGCGTGCTGGAGCACATGGTGGACACCGTGCTGTATTTCGAGGGCGAC
TCCCACTCCAGCTACCGGATGATACGCGCGATCAAGAACCGCTTCGGCGCGGTCAACGAGCTGGGCGTGTTCGCGATGAC
CGACCGCGGCCTGAAGGGCGTGTCCAATCCGTCGGCCATCTTCCTTTCCTCGTATCGCGACGACGTCGCCGGCTCCTGCG
TGCTGGTGACGCAGGAAGGCACGCGGCCGCTGCTGGTGGAAATCCAGGCCTTGGTCGACGACTGCCACGGCTTCCAGCCC
AAGCGTCTCACCGTCGGCCTGGAGCAGAACCGCCTGTCCATGCTGCTGGCGGTGCTGCACCGCCACGGCGGCGTCGCCTG
TTTCGACCAGGACGTGTTCCTCAACGCGGTGGGCGGCGTCAAGATCAACGAGCCGGCCGCCGACCTCGCCATCATCCTGG
CCATGGTTTCGTCGCTGCGCAACAAGGCGCTGCCGGAAAAACTGGTGGTGTTCGGCGAGGTGGGCCTGGCCGGCGAGGTG
CGGCCGGTGACGCGCGGCCAGGAACGCTTGAAGGAGGCGGCCAAGCTGGGCTTCACCCGCGCCATCGTGCCCACCGCCAA
CAAGCCGCGGCAGGAAATCGAGGGCCTGAAGGTCTTGGCCGTGGACCGCCTGGATCAGGCGGTGGAATACTGCAGGGAGT
AG

Domains

Predicted by InterproScan.

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

• Subunit ChlI of Mg-chelatase (ChlI) (360-427)

• AAA domain (AAA_25) (67-219)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	50.658	100	0.51
radA	Streptococcus mitis NCTC 12261	48.23	99.779	0.481
radA	Streptococcus mitis SK321	48.23	99.779	0.481
radA	Streptococcus pneumoniae Rx1	50	93.598	0.468
radA	Streptococcus pneumoniae D39	50	93.598	0.468
radA	Streptococcus pneumoniae R6	50	93.598	0.468
radA	Streptococcus pneumoniae TIGR4	50	93.598	0.468