Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   FOB43_RS15780 Genome accession   NZ_CP050992
Coordinates   3276952..3278352 (-) Length   466 a.a.
NCBI ID   WP_043614984.1    Uniprot ID   -
Organism   Chromobacterium violaceum strain FDAARGOS_635     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3271952..3283352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOB43_RS15750 (FOB43_15745) - 3272058..3273524 (-) 1467 WP_168228049.1 NAD(P)H-hydrate dehydratase -
  FOB43_RS15755 (FOB43_15750) - 3273527..3274132 (-) 606 WP_011136884.1 flavin prenyltransferase UbiX -
  FOB43_RS15760 (FOB43_15755) rapZ 3274185..3275027 (-) 843 WP_043615063.1 RNase adapter RapZ -
  FOB43_RS15765 (FOB43_15760) hprK 3275008..3275964 (-) 957 WP_011136882.1 HPr(Ser) kinase/phosphatase -
  FOB43_RS15770 (FOB43_15765) ptsN 3275957..3276418 (-) 462 WP_081542270.1 PTS IIA-like nitrogen regulatory protein PtsN -
  FOB43_RS15775 (FOB43_15770) raiA 3276552..3276884 (-) 333 WP_011136880.1 ribosome-associated translation inhibitor RaiA -
  FOB43_RS15780 (FOB43_15775) rpoN/rpoN1 3276952..3278352 (-) 1401 WP_043614984.1 RNA polymerase factor sigma-54 Machinery gene
  FOB43_RS15785 (FOB43_15780) lptB 3278356..3279084 (-) 729 WP_011136878.1 LPS export ABC transporter ATP-binding protein -
  FOB43_RS15790 (FOB43_15785) lptA 3279081..3279641 (-) 561 WP_168228050.1 lipopolysaccharide transport periplasmic protein LptA -
  FOB43_RS15795 (FOB43_15790) lptC 3279631..3280200 (-) 570 WP_081526418.1 LPS export ABC transporter periplasmic protein LptC -
  FOB43_RS15800 (FOB43_15795) - 3280197..3280721 (-) 525 WP_048403552.1 HAD-IIIA family hydrolase -
  FOB43_RS15805 (FOB43_15800) - 3280768..3281745 (-) 978 WP_043614976.1 KpsF/GutQ family sugar-phosphate isomerase -

Sequence

Protein


Download         Length: 466 a.a.        Molecular weight: 51487.58 Da        Isoelectric Point: 4.8629

>NTDB_id=435807 FOB43_RS15780 WP_043614984.1 3276952..3278352(-) (rpoN/rpoN1) [Chromobacterium violaceum strain FDAARGOS_635]
MKQALQLKVSQQLTLTPQLQQSIKLLQLSTLDLQAEVERFLLDNPLLERGDEPRDGEAPGDGPEQQDSPAEAQEADSRDD
GAGELLDWGAGARKGDDDDFDPMLNVPCPISLREHLLTQLGELALTDRDRAVVSLLIEELDDDGYLPLGLDELAGNLPLE
LELDSDELAVGLALLQQFDPAGVGARSLAESLTLQLRRLPGDEPGHALALAIVREHLALLGGRDYARLKKLLRCDDAALR
DAQALIARLNPHPATGFGHGDVHYVIPDISVRKLRGRWTAELNRAAMPRLRVNRLYERMLADHRAGGEMSGRLQEARWLV
KNIQQRFDTILKVAEAIVERQQLFFEHGEVAMRPLILRDIAEELGLHESTVSRSTSQKYLLCSRGLFELKYFFGSSLETE
SGGECSATAIKAHIRGMIDAEDRAKPLSDSAIADALAKQGIQVARRTVAKYREAMQIPAVNLRKAL

Nucleotide


Download         Length: 1401 bp        

>NTDB_id=435807 FOB43_RS15780 WP_043614984.1 3276952..3278352(-) (rpoN/rpoN1) [Chromobacterium violaceum strain FDAARGOS_635]
ATGAAACAGGCCCTTCAGCTCAAGGTATCCCAGCAACTGACGCTGACGCCGCAACTGCAGCAATCGATCAAGCTGCTGCA
GCTGTCCACGCTGGATCTGCAGGCGGAAGTGGAACGCTTCCTGCTCGACAATCCGCTGCTGGAGCGCGGCGACGAGCCCC
GCGACGGCGAGGCCCCGGGCGACGGTCCCGAACAGCAGGACAGCCCGGCCGAAGCGCAGGAAGCCGATAGCCGCGACGAC
GGCGCTGGCGAGCTGCTGGACTGGGGCGCGGGCGCCCGCAAGGGGGACGACGACGACTTCGACCCCATGCTCAACGTGCC
CTGCCCCATCAGCCTGCGCGAGCACCTGCTGACCCAGCTGGGCGAGCTCGCCCTCACAGACCGCGACCGCGCGGTGGTCA
GCCTGCTGATCGAGGAGCTGGACGACGACGGCTACCTGCCGCTGGGACTGGACGAACTGGCCGGCAACCTGCCGCTGGAA
CTGGAGCTGGACAGCGACGAGCTGGCGGTGGGCCTCGCGCTGCTGCAGCAGTTCGACCCGGCCGGCGTCGGCGCCCGCTC
GCTGGCCGAATCGCTGACGCTGCAGCTGCGGCGCCTGCCGGGAGACGAGCCCGGGCACGCGCTGGCGCTGGCCATCGTCC
GCGAGCATCTGGCATTGCTGGGCGGACGCGATTACGCCAGGCTGAAAAAGCTGCTGCGCTGCGACGACGCCGCGCTGCGC
GACGCGCAGGCGCTGATCGCCAGGCTCAACCCCCACCCCGCCACCGGCTTCGGCCACGGCGACGTCCACTACGTGATCCC
CGACATCAGCGTGCGCAAGCTGCGCGGCCGCTGGACGGCCGAGCTCAACCGCGCCGCGATGCCCCGCCTGCGGGTCAACC
GGCTGTACGAACGGATGCTGGCCGACCACCGCGCCGGCGGCGAAATGTCGGGCCGTCTGCAGGAGGCGCGCTGGCTGGTC
AAGAACATCCAGCAGCGATTTGACACCATACTCAAAGTGGCGGAAGCTATTGTCGAGCGTCAACAGTTGTTCTTTGAGCA
CGGCGAAGTGGCGATGCGCCCGCTGATTCTGCGGGACATCGCGGAAGAGCTGGGCCTGCACGAATCCACCGTTTCCCGTT
CCACCAGCCAGAAATACCTGCTCTGTTCGCGGGGTTTGTTCGAGCTCAAGTATTTCTTCGGCAGTTCGCTGGAAACTGAA
AGCGGCGGCGAGTGCTCCGCCACCGCGATCAAGGCCCATATCCGCGGCATGATAGACGCCGAGGACCGCGCCAAGCCGCT
GTCCGACAGCGCTATCGCCGACGCGCTGGCCAAACAGGGAATTCAGGTTGCCAGACGCACCGTAGCCAAGTATCGTGAAG
CCATGCAGATTCCGGCGGTGAATCTGCGCAAGGCGCTGTAG

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(311-464)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(110-296)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

52.096

100

0.56