Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   IMP05_RS00545 Genome accession   NZ_CP062910
Coordinates   110994..112418 (-) Length   474 a.a.
NCBI ID   WP_097429761.1    Uniprot ID   -
Organism   Escherichia coli O112ab:H8 strain Res13-Lact-EA06-22     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 105994..117418
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMP05_RS00515 (IMP05_00515) yeeZ 106049..106873 (+) 825 WP_000754758.1 SDR family oxidoreductase -
  IMP05_RS00520 (IMP05_00520) yeeY 106919..107848 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  IMP05_RS00525 (IMP05_00525) yoeI 108063..108125 (+) 63 WP_010723108.1 membrane protein YoeI -
  IMP05_RS00530 (IMP05_00530) plaP 108115..109473 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  IMP05_RS00535 (IMP05_00535) tsuA 109652..110710 (+) 1059 WP_023568741.1 thiosulfate utilization transporter TsuA/YeeE -
  IMP05_RS00540 (IMP05_00540) tsuB 110724..110951 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  IMP05_RS00545 (IMP05_00545) sbcB 110994..112418 (-) 1425 WP_097429761.1 exodeoxyribonuclease I Machinery gene
  IMP05_RS00550 (IMP05_00550) - 112600..113778 (+) 1179 WP_089584312.1 site-specific integrase -
  IMP05_RS00555 (IMP05_00555) - 113759..113950 (-) 192 WP_000132739.1 AlpA family phage regulatory protein -
  IMP05_RS00560 (IMP05_00560) - 114032..114376 (-) 345 WP_001281192.1 hypothetical protein -
  IMP05_RS00565 (IMP05_00565) - 114477..114656 (-) 180 WP_001277766.1 Eag protein -
  IMP05_RS26260 - 114753..114974 (-) 222 Protein_113 DUF551 domain-containing protein -
  IMP05_RS26265 - 115164..115289 (-) 126 Protein_114 hypothetical protein -
  IMP05_RS00575 (IMP05_00575) - 115292..115483 (-) 192 WP_114474746.1 hypothetical protein -
  IMP05_RS26270 - 115908..116108 (-) 201 Protein_116 hypothetical protein -
  IMP05_RS00585 (IMP05_00585) - 116105..116269 (-) 165 WP_001214456.1 DUF2737 family protein -
  IMP05_RS00590 (IMP05_00590) - 116266..116547 (-) 282 WP_024215524.1 DUF5405 family protein -
  IMP05_RS00595 (IMP05_00595) - 116564..116878 (-) 315 WP_000753560.1 hypothetical protein -
  IMP05_RS00600 (IMP05_00600) - 116890..117372 (-) 483 WP_195717746.1 siphovirus Gp157 family protein -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54432.68 Da        Isoelectric Point: 5.3435

>NTDB_id=435715 IMP05_RS00545 WP_097429761.1 110994..112418(-) (sbcB) [Escherichia coli O112ab:H8 strain Res13-Lact-EA06-22]
MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEAWAKGENE
AAFAARIHSLFTVPKTCILGYNNVRFDDEFTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGL
PSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRG
NTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDAD
RLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDK
RIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADNKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=435715 IMP05_RS00545 WP_097429761.1 110994..112418(-) (sbcB) [Escherichia coli O112ab:H8 strain Res13-Lact-EA06-22]
ATGACAGACACAGATAAACAACCTACCTTCCTCTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCGCCC
TGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCGCGG
ATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCATGGGCGAAAGGAGAAAACGAA
GCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTTCGA
CGACGAATTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGCGCT
GGGATTTGTTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGTCTA
CCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGTGTA
CGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATAAAC
ACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGAGCATGGCGCGGC
AATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGACAT
TTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACGCCG
CCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCCGAC
CGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGTGGT
GGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTGACG
CCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGATAAA
CGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTGGCT
GGAGCACCGCCGCCAGGTCTTCACGCCCGAGTTTTTACAAGGTTATGCAGATGAATTGCAGATGCTGGCACAACAATATG
CCGATAACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(12-187)

Exonuclease C-terminal (ExoI_SH3)

(211-471)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

99.156

0.582