Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   IMP37_RS08710 Genome accession   NZ_CP062901
Coordinates   1833937..1835364 (-) Length   475 a.a.
NCBI ID   WP_074158792.1    Uniprot ID   -
Organism   Escherichia coli O152:H23 strain Res13-Lact-ER01-35     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1828937..1840364
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMP37_RS08680 (IMP37_08675) yeeZ 1828992..1829816 (+) 825 WP_000754758.1 SDR family oxidoreductase -
  IMP37_RS08685 (IMP37_08680) yeeY 1829862..1830791 (+) 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
  IMP37_RS08690 (IMP37_08685) yoeI 1831006..1831068 (+) 63 WP_010723108.1 membrane protein YoeI -
  IMP37_RS08695 (IMP37_08690) plaP 1831058..1832416 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  IMP37_RS08700 (IMP37_08695) tsuA 1832595..1833653 (+) 1059 WP_167791450.1 thiosulfate utilization transporter TsuA/YeeE -
  IMP37_RS08705 (IMP37_08700) tsuB 1833667..1833894 (+) 228 WP_000985280.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  IMP37_RS08710 (IMP37_08705) sbcB 1833937..1835364 (-) 1428 WP_074158792.1 exodeoxyribonuclease I Machinery gene
  IMP37_RS08715 (IMP37_08710) dacD 1835573..1836739 (+) 1167 WP_001296209.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  IMP37_RS08720 (IMP37_08715) sbmC 1836858..1837331 (+) 474 WP_001105415.1 DNA gyrase inhibitor SbmC -
  IMP37_RS08725 (IMP37_08720) yeeA 1837529..1838587 (+) 1059 WP_001200891.1 FUSC family protein -
  IMP37_RS08730 (IMP37_08725) tmaR 1838759..1839088 (+) 330 WP_000450409.1 DUF496 family protein -
  IMP37_RS08735 (IMP37_08730) - 1839189..1839380 (-) 192 Protein_1712 EutP/PduV family microcompartment system protein -
  IMP37_RS08740 (IMP37_08735) cobU 1839547..1840092 (+) 546 WP_000973159.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54488.80 Da        Isoelectric Point: 5.4720

>NTDB_id=435587 IMP37_RS08710 WP_074158792.1 1833937..1835364(-) (sbcB) [Escherichia coli O152:H23 strain Res13-Lact-ER01-35]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISLLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=435587 IMP37_RS08710 WP_074158792.1 1833937..1835364(-) (sbcB) [Escherichia coli O152:H23 strain Res13-Lact-ER01-35]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGTTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGAGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCTATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGTTG
GCTGGAGCACCGCCGCCAGGTATTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAG

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.511

98.947

0.579