Detailed information NTG0435575

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: IMP37_RS05140
• Genome accession: NZ_CP062901
• Coordinates: 1074145..1075137 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli O152:H23 strain Res13-Lact-ER01-35
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1069145..1080137

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IMP37_RS05110 (IMP37_05105)	ispD	1069206..1069916 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
IMP37_RS05115 (IMP37_05110)	ispF	1069916..1070395 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
IMP37_RS05120 (IMP37_05115)	truD	1070392..1071441 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
IMP37_RS05125 (IMP37_05120)	surE	1071422..1072183 (+)	762	WP_001472109.1	5'/3'-nucleotidase SurE	-
IMP37_RS05130 (IMP37_05125)	pcm	1072177..1072803 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
IMP37_RS05135 (IMP37_05130)	nlpD	1072988..1074082 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
IMP37_RS05140 (IMP37_05135)	rpoS	1074145..1075137 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
IMP37_RS05145 (IMP37_05140)	ygbN	1075231..1076595 (-)	1365	WP_000104429.1	GntP family transporter	-
IMP37_RS05150 (IMP37_05145)	ygbM	1076684..1077460 (-)	777	WP_001136918.1	HPr family phosphocarrier protein	-
IMP37_RS05155 (IMP37_05150)	ygbL	1077465..1078103 (-)	639	WP_001278994.1	aldolase	-
IMP37_RS05160 (IMP37_05155)	otnK	1078100..1079362 (-)	1263	WP_000590392.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=435575 IMP37_RS05140 WP_000081550.1 1074145..1075137(+) (rpoS) [Escherichia coli O152:H23 strain Res13-Lact-ER01-35]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=435575 IMP37_RS05140 WP_000081550.1 1074145..1075137(+) (rpoS) [Escherichia coli O152:H23 strain Res13-Lact-ER01-35]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCGACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGATGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTACAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715